2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
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3 * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.schemabinding.version2.descriptors;
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21 //---------------------------------/
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22 //- Imported classes and packages -/
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23 //---------------------------------/
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25 import jalview.schemabinding.version2.VAMSAS;
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28 * Class VAMSASDescriptor.
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30 * @version $Revision$ $Date$
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32 public class VAMSASDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
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35 //--------------------------/
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36 //- Class/Member Variables -/
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37 //--------------------------/
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40 * Field _elementDefinition.
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42 private boolean _elementDefinition;
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47 private java.lang.String _nsPrefix;
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52 private java.lang.String _nsURI;
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57 private java.lang.String _xmlName;
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64 public VAMSASDescriptor() {
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66 _nsURI = "www.vamsas.ac.uk/jalview/version2";
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67 _xmlName = "VAMSAS";
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68 _elementDefinition = false;
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70 //-- set grouping compositor
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71 setCompositorAsSequence();
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72 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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73 org.exolab.castor.mapping.FieldHandler handler = null;
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74 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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75 //-- initialize attribute descriptors
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77 //-- initialize element descriptors
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80 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_treeList", "Tree", org.exolab.castor.xml.NodeType.Element);
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81 desc.setImmutable(true);
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82 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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83 public java.lang.Object getValue( java.lang.Object object )
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84 throws IllegalStateException
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86 VAMSAS target = (VAMSAS) object;
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87 return target.getTree();
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89 public void setValue( java.lang.Object object, java.lang.Object value)
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90 throws IllegalStateException, IllegalArgumentException
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93 VAMSAS target = (VAMSAS) object;
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94 target.addTree( (java.lang.String) value);
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95 } catch (java.lang.Exception ex) {
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96 throw new IllegalStateException(ex.toString());
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99 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
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101 VAMSAS target = (VAMSAS) object;
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102 target.removeAllTree();
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103 } catch (java.lang.Exception ex) {
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104 throw new IllegalStateException(ex.toString());
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107 public java.lang.Object newInstance(java.lang.Object parent) {
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111 desc.setHandler(handler);
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112 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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113 desc.setMultivalued(true);
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114 addFieldDescriptor(desc);
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116 //-- validation code for: _treeList
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117 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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118 fieldValidator.setMinOccurs(0);
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120 org.exolab.castor.xml.validators.StringValidator typeValidator;
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121 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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122 fieldValidator.setValidator(typeValidator);
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123 typeValidator.setWhiteSpace("preserve");
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125 desc.setValidator(fieldValidator);
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126 //-- _sequenceSetList
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127 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.SequenceSet.class, "_sequenceSetList", "SequenceSet", org.exolab.castor.xml.NodeType.Element);
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128 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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129 public java.lang.Object getValue( java.lang.Object object )
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130 throws IllegalStateException
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132 VAMSAS target = (VAMSAS) object;
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133 return target.getSequenceSet();
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135 public void setValue( java.lang.Object object, java.lang.Object value)
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136 throws IllegalStateException, IllegalArgumentException
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139 VAMSAS target = (VAMSAS) object;
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140 target.addSequenceSet( (jalview.schemabinding.version2.SequenceSet) value);
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141 } catch (java.lang.Exception ex) {
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142 throw new IllegalStateException(ex.toString());
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145 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
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147 VAMSAS target = (VAMSAS) object;
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148 target.removeAllSequenceSet();
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149 } catch (java.lang.Exception ex) {
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150 throw new IllegalStateException(ex.toString());
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153 public java.lang.Object newInstance(java.lang.Object parent) {
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154 return new jalview.schemabinding.version2.SequenceSet();
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157 desc.setHandler(handler);
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158 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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159 desc.setMultivalued(true);
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160 addFieldDescriptor(desc);
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162 //-- validation code for: _sequenceSetList
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163 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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164 fieldValidator.setMinOccurs(0);
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167 desc.setValidator(fieldValidator);
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176 * Method getAccessMode.
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178 * @return the access mode specified for this class.
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180 public org.exolab.castor.mapping.AccessMode getAccessMode(
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186 * Method getIdentity.
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188 * @return the identity field, null if this class has no
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191 public org.exolab.castor.mapping.FieldDescriptor getIdentity(
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193 return super.getIdentity();
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197 * Method getJavaClass.
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199 * @return the Java class represented by this descriptor.
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201 public java.lang.Class getJavaClass(
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203 return jalview.schemabinding.version2.VAMSAS.class;
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207 * Method getNameSpacePrefix.
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209 * @return the namespace prefix to use when marshaling as XML.
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211 public java.lang.String getNameSpacePrefix(
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217 * Method getNameSpaceURI.
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219 * @return the namespace URI used when marshaling and
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220 * unmarshaling as XML.
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222 public java.lang.String getNameSpaceURI(
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228 * Method getValidator.
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230 * @return a specific validator for the class described by this
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233 public org.exolab.castor.xml.TypeValidator getValidator(
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239 * Method getXMLName.
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241 * @return the XML Name for the Class being described.
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243 public java.lang.String getXMLName(
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249 * Method isElementDefinition.
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251 * @return true if XML schema definition of this Class is that
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253 * element or element with anonymous type definition.
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255 public boolean isElementDefinition(
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257 return _elementDefinition;
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