2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
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3 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
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5 * This file is part of Jalview.
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7 * Jalview is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License
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9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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11 * Jalview is distributed in the hope that it will be useful, but
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12 * WITHOUT ANY WARRANTY; without even the implied warranty
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13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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14 * PURPOSE. See the GNU General Public License for more details.
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16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
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18 package jalview.schemabinding.version2.descriptors;
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20 //---------------------------------/
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21 //- Imported classes and packages -/
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22 //---------------------------------/
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24 import jalview.schemabinding.version2.VAMSAS;
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27 * Class VAMSASDescriptor.
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29 * @version $Revision$ $Date$
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31 public class VAMSASDescriptor extends
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32 org.exolab.castor.xml.util.XMLClassDescriptorImpl
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35 // --------------------------/
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36 // - Class/Member Variables -/
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37 // --------------------------/
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40 * Field _elementDefinition.
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42 private boolean _elementDefinition;
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47 private java.lang.String _nsPrefix;
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52 private java.lang.String _nsURI;
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57 private java.lang.String _xmlName;
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59 // ----------------/
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60 // - Constructors -/
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61 // ----------------/
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63 public VAMSASDescriptor()
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66 _nsURI = "www.vamsas.ac.uk/jalview/version2";
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67 _xmlName = "VAMSAS";
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68 _elementDefinition = false;
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70 // -- set grouping compositor
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71 setCompositorAsSequence();
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72 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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73 org.exolab.castor.mapping.FieldHandler handler = null;
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74 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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75 // -- initialize attribute descriptors
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77 // -- initialize element descriptors
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80 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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81 java.lang.String.class, "_treeList", "Tree",
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82 org.exolab.castor.xml.NodeType.Element);
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83 desc.setImmutable(true);
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84 handler = new org.exolab.castor.xml.XMLFieldHandler()
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86 public java.lang.Object getValue(java.lang.Object object)
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87 throws IllegalStateException
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89 VAMSAS target = (VAMSAS) object;
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90 return target.getTree();
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93 public void setValue(java.lang.Object object, java.lang.Object value)
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94 throws IllegalStateException, IllegalArgumentException
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98 VAMSAS target = (VAMSAS) object;
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99 target.addTree((java.lang.String) value);
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100 } catch (java.lang.Exception ex)
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102 throw new IllegalStateException(ex.toString());
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106 public void resetValue(Object object) throws IllegalStateException,
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107 IllegalArgumentException
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111 VAMSAS target = (VAMSAS) object;
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112 target.removeAllTree();
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113 } catch (java.lang.Exception ex)
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115 throw new IllegalStateException(ex.toString());
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119 public java.lang.Object newInstance(java.lang.Object parent)
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124 desc.setHandler(handler);
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125 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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126 desc.setMultivalued(true);
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127 addFieldDescriptor(desc);
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129 // -- validation code for: _treeList
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130 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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131 fieldValidator.setMinOccurs(0);
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132 { // -- local scope
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133 org.exolab.castor.xml.validators.StringValidator typeValidator;
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134 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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135 fieldValidator.setValidator(typeValidator);
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136 typeValidator.setWhiteSpace("preserve");
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138 desc.setValidator(fieldValidator);
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139 // -- _sequenceSetList
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140 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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141 jalview.schemabinding.version2.SequenceSet.class,
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142 "_sequenceSetList", "SequenceSet",
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143 org.exolab.castor.xml.NodeType.Element);
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144 handler = new org.exolab.castor.xml.XMLFieldHandler()
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146 public java.lang.Object getValue(java.lang.Object object)
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147 throws IllegalStateException
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149 VAMSAS target = (VAMSAS) object;
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150 return target.getSequenceSet();
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153 public void setValue(java.lang.Object object, java.lang.Object value)
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154 throws IllegalStateException, IllegalArgumentException
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158 VAMSAS target = (VAMSAS) object;
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159 target.addSequenceSet((jalview.schemabinding.version2.SequenceSet) value);
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160 } catch (java.lang.Exception ex)
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162 throw new IllegalStateException(ex.toString());
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166 public void resetValue(Object object) throws IllegalStateException,
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167 IllegalArgumentException
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171 VAMSAS target = (VAMSAS) object;
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172 target.removeAllSequenceSet();
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173 } catch (java.lang.Exception ex)
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175 throw new IllegalStateException(ex.toString());
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179 public java.lang.Object newInstance(java.lang.Object parent)
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181 return new jalview.schemabinding.version2.SequenceSet();
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184 desc.setHandler(handler);
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185 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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186 desc.setMultivalued(true);
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187 addFieldDescriptor(desc);
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189 // -- validation code for: _sequenceSetList
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190 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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191 fieldValidator.setMinOccurs(0);
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192 { // -- local scope
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194 desc.setValidator(fieldValidator);
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202 * Method getAccessMode.
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204 * @return the access mode specified for this class.
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206 public org.exolab.castor.mapping.AccessMode getAccessMode()
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212 * Method getIdentity.
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214 * @return the identity field, null if this class has no identity.
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216 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
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218 return super.getIdentity();
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222 * Method getJavaClass.
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224 * @return the Java class represented by this descriptor.
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226 public java.lang.Class getJavaClass()
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228 return jalview.schemabinding.version2.VAMSAS.class;
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232 * Method getNameSpacePrefix.
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234 * @return the namespace prefix to use when marshaling as XML.
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236 public java.lang.String getNameSpacePrefix()
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242 * Method getNameSpaceURI.
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244 * @return the namespace URI used when marshaling and unmarshaling as XML.
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246 public java.lang.String getNameSpaceURI()
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252 * Method getValidator.
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254 * @return a specific validator for the class described by this
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257 public org.exolab.castor.xml.TypeValidator getValidator()
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263 * Method getXMLName.
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265 * @return the XML Name for the Class being described.
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267 public java.lang.String getXMLName()
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273 * Method isElementDefinition.
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275 * @return true if XML schema definition of this Class is that of a global
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276 * element or element with anonymous type definition.
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278 public boolean isElementDefinition()
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280 return _elementDefinition;
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