2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.schemes;
23 import jalview.api.AlignViewportI;
24 import jalview.datamodel.AnnotatedCollectionI;
25 import jalview.datamodel.SequenceCollectionI;
26 import jalview.datamodel.SequenceI;
28 import java.awt.Color;
37 public class BuriedColourScheme extends ScoreColourScheme
40 * Creates a new BuriedColourScheme object.
42 public BuriedColourScheme()
44 super(ResidueProperties.aaIndex, ResidueProperties.buried,
45 ResidueProperties.buriedmin, ResidueProperties.buriedmax);
54 * @return DOCUMENT ME!
57 public Color makeColour(float c)
59 return new Color(0, (float) (1.0 - c), c);
63 public boolean isPeptideSpecific()
69 public String getSchemeName()
71 return JalviewColourScheme.Buried.toString();
75 * Returns a new instance of this colour scheme with which the given data may
79 public ColourSchemeI getInstance(AlignViewportI view,
80 AnnotatedCollectionI coll,
81 Map<SequenceI, SequenceCollectionI> hrs)
83 return new BuriedColourScheme();