2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.schemes;
23 import jalview.api.AlignViewportI;
24 import jalview.datamodel.AnnotatedCollectionI;
25 import jalview.datamodel.SequenceCollectionI;
26 import jalview.datamodel.SequenceI;
28 import java.awt.Color;
31 public class HelixColourScheme extends ScoreColourScheme
33 public HelixColourScheme()
35 super(ResidueProperties.aaIndex, ResidueProperties.helix,
36 ResidueProperties.helixmin, ResidueProperties.helixmax);
40 public Color makeColour(float c)
42 return new Color(c, (float) 1.0 - c, c);
46 public boolean isPeptideSpecific()
52 public String getSchemeName()
54 return JalviewColourScheme.Helix.toString();
58 * Returns a new instance of this colour scheme with which the given data may
62 public ColourSchemeI getInstance(AlignViewportI view,
63 AnnotatedCollectionI coll,
64 Map<SequenceI, SequenceCollectionI> hrs)
66 return new HelixColourScheme();