1 package jalview.schemes;
4 * An enum with the colour schemes supported by Jalview.
6 public enum JalviewColourScheme
9 * the order of declaration is the default order in which
10 * items are added to Colour menus
12 Clustal("Clustal", ClustalxColourScheme.class),
13 Blosum62("Blosum62", Blosum62ColourScheme.class),
14 PID("% Identity", PIDColourScheme.class),
15 Zappo("Zappo", ZappoColourScheme.class),
16 Taylor("Taylor", TaylorColourScheme.class),
17 Hydrophobic("Hydrophobic", HydrophobicColourScheme.class),
18 Helix("Helix Propensity", HelixColourScheme.class),
19 Strand("Strand Propensity", StrandColourScheme.class),
20 Turn("Turn Propensity", TurnColourScheme.class),
21 Buried("Buried Index", BuriedColourScheme.class),
22 Nucleotide("Nucleotide", NucleotideColourScheme.class),
23 PurinePyrimidine("Purine/Pyrimidine", PurinePyrimidineColourScheme.class),
24 RNAHelices("RNA Helices", RNAHelicesColour.class),
25 TCoffee("T-Coffee Scores", TCoffeeColourScheme.class);
26 // RNAInteraction("RNA Interaction type", RNAInteractionColourScheme.class)
30 private Class<? extends ColourSchemeI> myClass;
33 * Constructor given the name of the colour scheme (as used in Jalview
34 * parameters). Note this is not necessarily the same as the 'display name'
35 * used in menu options (as this may be language-dependent).
39 JalviewColourScheme(String s, Class<? extends ColourSchemeI> cl)
46 * Returns the class of the colour scheme
50 public Class<? extends ColourSchemeI> getSchemeClass()
56 * Returns the 'official' name of this colour scheme. This is the name that
57 * identifies the colour scheme as a start-up parameter for the Jalview
58 * application or applet. Note that it may not be the name shown in menu
59 * options, as these may be internationalised.
62 public String toString()