1 package jalview.schemes;
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5 public class ScoreColourScheme extends ResidueColourScheme {
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8 public double[] scores;
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10 public ScoreColourScheme( double[] scores,
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16 this.scores = scores;
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22 public Color findColour(String s,int j)
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27 if (!aboveThreshold(s,j))
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31 float red = (float)(scores[((Integer)ResidueProperties.aaHash.get(s)).intValue()]
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32 - (float)min)/(float)(max - min);
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39 char c = s.charAt(0);
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41 if(jalview.util.Comparison.isGap((c)))
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44 // This isn';t great - pool of colours in here?
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45 return makeColour(red);
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47 public Color makeColour(float c) {
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48 return new Color(c,(float)0.0,(float)1.0-c);
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