1 package jalview.schemes;
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3 import jalview.datamodel.*;
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4 import jalview.jbgui.*;
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9 public class ScoreColourScheme extends ResidueColourScheme {
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12 public double[] scores;
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14 public ScoreColourScheme( double[] scores,
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20 this.scores = scores;
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26 public Color findColour(String s,int j,Vector aa)
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31 if (!aboveThreshold(aa,s,j))
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35 float red = (float)(scores[((Integer)ResidueProperties.aaHash.get(s)).intValue()]
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36 - (float)min)/(float)(max - min);
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43 char c = s.charAt(0);
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45 if(jalview.util.Comparison.isGap((c)))
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48 // This isn';t great - pool of colours in here?
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49 return makeColour(red);
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51 public Color makeColour(float c) {
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52 return new Color(c,(float)0.0,(float)1.0-c);
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