1 package jalview.structure;
4 * Java bean representing an atom in a PDB (or similar) structure model.
11 // TODO clarify do we want pdbFile here, or pdbId?
12 // compare highlightAtom in 2.8.2 for JalviewJmolBinding and
13 // javascript.MouseOverStructureListener
14 private String pdbFile;
18 private int pdbResNum;
20 private int atomIndex;
30 public AtomSpec(String pdbFile, String chain, int resNo, int atomNo)
32 this.pdbFile = pdbFile;
34 this.pdbResNum = resNo;
35 this.atomIndex = atomNo;
38 public String getPdbFile()
43 public String getChain()
48 public int getPdbResNum()
53 public int getAtomIndex()
59 public String toString()
61 return "pdbFile: " + pdbFile + ", chain: " + chain + ", res: "
62 + pdbResNum + ", atom: " + atomIndex;