2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
3 * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
18 package jalview.structure;
20 public interface StructureListener
24 * @return list of structure files (unique IDs/filenames) that this listener
25 * handles messages for, or null if generic listener (only used by
26 * removeListener method)
28 public String[] getPdbFile();
31 * NOT A LISTENER METHOD! called by structure viewer when the given
32 * atom/structure has been moused over. Typically, implementors call
33 * StructureSelectionManager.mouseOverStructure
38 public void mouseOverStructure(int atomIndex, String strInfo);
41 * called by StructureSelectionManager to inform viewer to highlight given
49 public void highlightAtom(int atomIndex, int pdbResNum, String chain,
53 * called by StructureSelectionManager when the colours of a sequence
54 * associated with a structure have changed.
57 * (untyped) usually an alignPanel
59 public void updateColours(Object source);
62 * called by Jalview to get the colour for the given atomspec
70 public java.awt.Color getColour(int atomIndex, int pdbResNum,
71 String chain, String pdbId);
74 * called by structureSelectionManager to instruct implementor to release any
75 * direct references it may hold to the given object (typically, these are
76 * Jalview alignment panels).
80 public void releaseReferences(Object svl);