2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 import java.util.HashMap;
27 * A class to hold constants relating to Url links used in Jalview
29 public class Constants
32 //character used to represent secondary structures
33 public static final char HELIX = 'H';
34 public static final char SHEET = 'E';
35 public static final char COIL = 'C';
37 //label in secondary structure annotation data model from 3d structures
38 public static final String SS_ANNOTATION_LABEL = "Secondary Structure";
40 //label in secondary structure annotation data model from JPred
41 public static final String SS_ANNOTATION_FROM_JPRED_LABEL = "jnetpred";
43 public static final Map<String, String> SECONDARY_STRUCTURE_LABELS = new HashMap<>();
45 SECONDARY_STRUCTURE_LABELS.put(SS_ANNOTATION_LABEL, "3D Structures");
46 SECONDARY_STRUCTURE_LABELS.put(SS_ANNOTATION_FROM_JPRED_LABEL, "JPred");
47 // Add other secondary structure labels here if needed