src/jalview/ws/MsaWServices.java

   1 package jalview.ws;
   2 import java.util.Hashtable;
   3 /**
   4  * <p>Title: MsaWServices </p>
   5  *
   6  * <p>Description: Registry of MsaWSI style services </p>
   7  *
   8  * <p>Copyright: Copyright (c) 2004</p>
   9  *
  10  * <p>Company: Dundee University</p>
  11  *
  12  * @author not attributable
  13  * @version 1.0
  14  */
  15 /**
  16  * TODO: MsaWServices will be set from properties and be dynamically discovered.
  17  */
  18 public class MsaWServices {
  19   public static Hashtable info;
  20   static
  21   {
  22     info = new Hashtable();
  23     info.put("ClustalWS",
  24              new String[]
  25              {
  26              "http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS",
  27              "ClustalW Alignment job",
  28              "\"Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple" +
  29              " sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice."
  30              + " Nucleic Acids Research, submitted, June 1994."
  31     });
  32     info.put("MuscleWS",
  33              new String[]
  34              {
  35              "http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS",
  36              "Muscle Alignment job",
  37              "Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment "
  38              +
  39              "with high accuracy and high throughput, Nucleic Acids Research 32(5), 1792-97."
  40     });
  41   };
  42 }