2 * Jalview - A Sequence Alignment Editor and Viewer
3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
5 * This program is free software; you can redistribute it and/or
6 * modify it under the terms of the GNU General Public License
7 * as published by the Free Software Foundation; either version 2
8 * of the License, or (at your option) any later version.
10 * This program is distributed in the hope that it will be useful,
11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
13 * GNU General Public License for more details.
15 * You should have received a copy of the GNU General Public License
16 * along with this program; if not, write to the Free Software
17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
21 import java.util.Hashtable;
\r
25 * <p>Title: MsaWServices </p>
27 * <p>Description: Registry of MsaWSI style services </p>
29 * <p>Copyright: Copyright (c) 2004</p>
31 * <p>Company: Dundee University</p>
33 * @author not attributable
37 * TODO: MsaWServices will be set from properties and be dynamically discovered.
39 public class MsaWServices {
\r
40 public static Hashtable info;
\r
43 info = new Hashtable();
\r
44 info.put("ClustalWS",
\r
46 "http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS",
\r
47 "ClustalW Alignment job",
\r
49 "\"Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple" +
\r
50 " sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice." +
\r
51 " Nucleic Acids Research, submitted, June 1994."
\r
53 info.put("MuscleWS",
\r
55 "http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS",
\r
56 "Muscle Alignment job",
\r
58 "Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment " +
\r
59 "with high accuracy and high throughput, Nucleic Acids Research 32(5), 1792-97."
\r