1 package jalview.ws.dbsources;
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3 import java.io.BufferedReader;
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5 import java.io.FileReader;
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7 import com.stevesoft.pat.Regex;
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9 import jalview.datamodel.AlignmentI;
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10 import jalview.ws.DbSourceProxyImpl;
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12 public abstract class EbiFileRetrievedProxy extends DbSourceProxyImpl
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16 * temp path to retrieved file
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18 protected String file = null;
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20 public StringBuffer getRawRecords()
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24 StringBuffer bf=null;
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26 File f = new File(file);
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29 bf = new StringBuffer();
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30 BufferedReader breader = new BufferedReader(new FileReader(f));
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32 while (breader.ready() && (line = breader.readLine())!=null)
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38 } catch (Exception e)
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40 System.err.println("Warning: problens reading temp file "+file);
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