2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.ws.dbsources;
23 import com.stevesoft.pat.Regex;
25 import jalview.datamodel.AlignmentI;
26 import jalview.datamodel.DBRefSource;
28 public class EmblCdsSource extends /*EmblXmlSource */ EmblFlatfileSource
31 public EmblCdsSource()
37 public String getDbSource()
39 return DBRefSource.EMBLCDS;
43 public AlignmentI getSequenceRecords(String queries) throws Exception
45 if (queries.indexOf(".") > -1)
47 queries = queries.substring(0, queries.indexOf("."));
49 return getEmblSequenceRecords(DBRefSource.EMBLCDS, queries);
53 * cDNA for LDHA_CHICK swissprot sequence
56 public String getTestQuery()
62 public String getDbName()