2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
17 * The Jalview Authors are detailed in the 'AUTHORS' file.
19 package jalview.ws.dbsources;
21 import jalview.ws.seqfetcher.DbSourceProxy;
24 * flyweight class specifying retrieval of Seed alignments from PFAM
29 public class PfamSeed extends Pfam implements DbSourceProxy
39 * @see jalview.ws.dbsources.Pfam#getPFAMURL()
41 protected String getXFAMURL()
43 return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&format=stockholm&order=t&case=l&gaps=default&entry=";
49 * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
51 public String getDbName()
56 public String getDbSource()
58 return jalview.datamodel.DBRefSource.PFAM; // archetype source
61 public String getTestQuery()