2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
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3 * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.ws.dbsources;
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21 import jalview.ws.seqfetcher.DbSourceProxy;
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24 * flyweight class specifying retrieval of Seed alignments from PFAM
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29 public class PfamSeed extends Pfam implements DbSourceProxy
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39 * @see jalview.ws.dbsources.Pfam#getPFAMURL()
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41 protected String getPFAMURL()
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43 return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&format=stockholm&order=t&case=l&gaps=default&entry=";
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49 * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
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51 public String getDbName()
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53 return "PFAM (Seed)";
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56 public String getDbSource()
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58 return jalview.datamodel.DBRefSource.PFAM; // archetype source
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61 public String getTestQuery()
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