2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.ws.dbsources;
24 * Flyweight class specifying retrieval of Seed family alignments from RFAM
26 * @author Lauren Michelle Lui
29 public class RfamSeed extends Rfam
39 * @see jalview.ws.dbsources.Rfam#getRFAMURL()
42 protected String getXFAMURL()
44 return "http://rfam.xfam.org/family/";
48 public String getXFAMURLSUFFIX()
50 // to download gzipped file add '?gzip=1'
51 return "/alignment/stockholm";
57 * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
60 public String getDbName()
66 public String getDbSource()
68 return getDbName(); // so we have unique DbSource string.
72 public String getTestQuery()
75 } // http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014
78 public String getDbVersion()