src/jalview/ws/intermine/IntermineFetchClient.java

   1 package jalview.ws.intermine;
   2
   3 import jalview.ws.HttpClientUtils;
   4
   5 import java.io.IOException;
   6
   7 import javax.ws.rs.core.MultivaluedMap;
   8
   9 import org.apache.http.client.ClientProtocolException;
  10
  11 import com.sun.jersey.api.client.Client;
  12
  13 public class IntermineFetchClient
  14 {
  15
  16   private static final Client client = Client.create();
  17
  18   public static enum IntermineDB
  19   {
  20     YeastMine("Yeast Mine", "http://yeastmine.yeastgenome.org/yeastmine"), FlyMine(
  21             "Fly Mine", "http://www.flymine.org/query"), FlyMine_Beta(
  22                     "Fly Mine Beta",
  23                     "http://beta.flymine.org/beta"), MouseMine("Mouse Mine",
  24                             "http://www.mousemine.org/mousemine"), modMine(
  25                                     "Mod Mine",
  26                                     "http://intermine.modencode.org/modminetest"), RatMine(
  27                                             "Rat Mine", "http://ratmine.mcw.edu/ratmine");
  28
  29     private final String name;
  30     private final String Url;
  31
  32     IntermineDB(String name, String Url)
  33     {
  34       this.Url = Url;
  35       this.name = name;
  36     }
  37
  38     public String getName()
  39     {
  40       return this.name;
  41     }
  42
  43     public String getURL()
  44     {
  45       return this.Url;
  46     }
  47   }
  48
  49   public static enum IntermineMethod
  50   {
  51     GET_VERSION("/service/version"), GET_RELEASE("/service/version/release"), GET_FASTA_LIST(
  52             "/service/list/results/fasta"), GET_FASTA_QUERY(
  53                     "/query/results/fasta");
  54
  55     private final String target;
  56
  57     IntermineMethod(String target)
  58     {
  59       this.target = target;
  60     }
  61
  62     public String getTarget()
  63     {
  64       return target;
  65     }
  66
  67   }
  68
  69   public static String[] getSupportedDBs()
  70   {
  71     String[] supportedDbs = new String[IntermineDB.values().length];
  72     int count = 0;
  73     for (IntermineDB db : IntermineDB.values())
  74     {
  75       supportedDbs[count++] = db.getName();
  76     }
  77     return supportedDbs;
  78
  79   }
  80
  81   public static String fetchData(IntermineDB Database,
  82           IntermineMethod method, MultivaluedMap<String, String> params)
  83   {
  84     String response = "";
  85     if (params.isEmpty())
  86     {
  87
  88       response = client.resource(Database.getURL() + method.getTarget())
  89               .accept("text/plain")
  90               .get(String.class);
  91
  92     }
  93     else
  94     {
  95       response = client.resource(Database.getURL() + method.getTarget())
  96               .queryParams(params)
  97               .get(String.class);
  98     }
  99     return response;
 100   }
 101
 102   public static String fetchData(String url)
 103           throws ClientProtocolException, IOException
 104   {
 105
 106     return HttpClientUtils.doHttpUrlGet(url);// client.resource(url).get(String.class);
 107   }
 108
 109
 110 }