src/jalview/ws/intermine/IntermineFetchClient.java

   1 package jalview.ws.intermine;
   2
   3 import jalview.ws.HttpClientUtils;
   4
   5 import java.io.IOException;
   6
   7 import org.apache.http.client.ClientProtocolException;
   8
   9
  10 public class IntermineFetchClient
  11 {
  12
  13
  14   public static enum IntermineDB
  15   {
  16     YeastMine("Yeast Mine", "http://yeastmine.yeastgenome.org/yeastmine"), FlyMine(
  17             "Fly Mine", "http://www.flymine.org/query"), FlyMine_Beta(
  18                     "Fly Mine Beta",
  19                     "http://beta.flymine.org/beta"), MouseMine("Mouse Mine",
  20                             "http://www.mousemine.org/mousemine"), modMine(
  21                                     "Mod Mine",
  22                                     "http://intermine.modencode.org/modminetest"), RatMine(
  23                                             "Rat Mine", "http://ratmine.mcw.edu/ratmine");
  24
  25     private final String name;
  26     private final String Url;
  27
  28     IntermineDB(String name, String Url)
  29     {
  30       this.Url = Url;
  31       this.name = name;
  32     }
  33
  34     public String getName()
  35     {
  36       return this.name;
  37     }
  38
  39     public String getURL()
  40     {
  41       return this.Url;
  42     }
  43   }
  44
  45   public static enum IntermineMethod
  46   {
  47     GET_VERSION("/service/version"), GET_RELEASE("/service/version/release"), GET_FASTA_LIST(
  48             "/service/list/results/fasta"), GET_FASTA_QUERY(
  49                     "/query/results/fasta");
  50
  51     private final String target;
  52
  53     IntermineMethod(String target)
  54     {
  55       this.target = target;
  56     }
  57
  58     public String getTarget()
  59     {
  60       return target;
  61     }
  62
  63   }
  64
  65   public static String[] getSupportedDBs()
  66   {
  67     String[] supportedDbs = new String[IntermineDB.values().length];
  68     int count = 0;
  69     for (IntermineDB db : IntermineDB.values())
  70     {
  71       supportedDbs[count++] = db.getName();
  72     }
  73     return supportedDbs;
  74
  75   }
  76
  77
  78   public static String fetchData(String url)
  79           throws ClientProtocolException, IOException
  80   {
  81
  82     return HttpClientUtils.doHttpUrlGet(url);// client.resource(url).get(String.class);
  83   }
  84
  85
  86 }