src/jalview/ws/jws2/JabaWsParamTest.java

   1 package jalview.ws.jws2;
   2
   3 import jalview.gui.WsJobParameters;
   4 import jalview.util.MessageManager;
   5 import jalview.ws.jws2.jabaws2.Jws2Instance;
   6
   7 import java.awt.BorderLayout;
   8 import java.awt.event.WindowEvent;
   9 import java.awt.event.WindowListener;
  10 import java.util.Iterator;
  11 import java.util.List;
  12 import java.util.Vector;
  13
  14 import javax.swing.JFrame;
  15 import javax.swing.JPanel;
  16
  17 import compbio.metadata.Option;
  18 import compbio.metadata.Parameter;
  19 import compbio.metadata.Preset;
  20 import compbio.metadata.PresetManager;
  21
  22 public class JabaWsParamTest
  23 {
  24
  25   /**
  26    * testing method - grab a service and parameter set and show the window
  27    *
  28    * @param args
  29    */
  30   public static void main(String[] args)
  31   {
  32     jalview.ws.jws2.Jws2Discoverer disc = jalview.ws.jws2.Jws2Discoverer
  33             .getDiscoverer();
  34     int p = 0;
  35     if (args.length > 0)
  36     {
  37       Vector<String> services = new Vector<>();
  38       services.addElement(args[p++]);
  39       Jws2Discoverer.getDiscoverer().setServiceUrls(services);
  40     }
  41     try
  42     {
  43       disc.run();
  44     } catch (Exception e)
  45     {
  46       System.err.println("Aborting. Problem discovering services.");
  47       e.printStackTrace();
  48       return;
  49     }
  50     Jws2Instance lastserv = null;
  51     for (Jws2Instance service : disc.getServices())
  52     {
  53       lastserv = service;
  54       if (p >= args.length || service.getName().equalsIgnoreCase(args[p]))
  55       {
  56         if (lastserv != null)
  57         {
  58           List<Preset> prl = null;
  59           Preset pr = null;
  60           if (++p < args.length)
  61           {
  62             PresetManager prman = lastserv.getPresets();
  63             if (prman != null)
  64             {
  65               pr = prman.getPresetByName(args[p]);
  66               if (pr == null)
  67               {
  68                 // just grab the last preset.
  69                 prl = prman.getPresets();
  70               }
  71             }
  72           }
  73           else
  74           {
  75             PresetManager prman = lastserv.getPresets();
  76             if (prman != null)
  77             {
  78               prl = prman.getPresets();
  79             }
  80           }
  81           Iterator<Preset> en = (prl == null) ? null : prl.iterator();
  82           while (en != null && en.hasNext())
  83           {
  84             if (en != null)
  85             {
  86               if (!en.hasNext())
  87               {
  88                 en = prl.iterator();
  89               }
  90               pr = en.next();
  91             }
  92             {
  93               System.out.println("Testing opts dupes for "
  94                       + lastserv.getUri() + " : " + lastserv.getActionText()
  95                       + ":" + pr.getName());
  96               List<Option> rg = lastserv.getRunnerConfig().getOptions();
  97               for (Option o : rg)
  98               {
  99                 try
 100                 {
 101                   Option cpy = jalview.ws.jws2.ParameterUtils.copyOption(o);
 102                 } catch (Exception e)
 103                 {
 104                   System.err.println("Failed to copy " + o.getName());
 105                   e.printStackTrace();
 106                 } catch (Error e)
 107                 {
 108                   System.err.println("Failed to copy " + o.getName());
 109                   e.printStackTrace();
 110                 }
 111               }
 112             }
 113             {
 114               System.out.println("Testing param dupes:");
 115               List<Parameter> rg = lastserv.getRunnerConfig()
 116                       .getParameters();
 117               for (Parameter o : rg)
 118               {
 119                 try
 120                 {
 121                   Parameter cpy = jalview.ws.jws2.ParameterUtils
 122                           .copyParameter(o);
 123                 } catch (Exception e)
 124                 {
 125                   System.err.println("Failed to copy " + o.getName());
 126                   e.printStackTrace();
 127                 } catch (Error e)
 128                 {
 129                   System.err.println("Failed to copy " + o.getName());
 130                   e.printStackTrace();
 131                 }
 132               }
 133             }
 134             {
 135               System.out.println("Testing param write:");
 136               List<String> writeparam = null, readparam = null;
 137               try
 138               {
 139                 writeparam = jalview.ws.jws2.ParameterUtils
 140                         .writeParameterSet(
 141                                 pr.getArguments(lastserv.getRunnerConfig()),
 142                                 " ");
 143                 System.out.println("Testing param read :");
 144                 List<Option> pset = jalview.ws.jws2.ParameterUtils
 145                         .processParameters(writeparam,
 146                                 lastserv.getRunnerConfig(), " ");
 147                 readparam = jalview.ws.jws2.ParameterUtils
 148                         .writeParameterSet(pset, " ");
 149                 Iterator<String> o = pr.getOptions().iterator(),
 150                         s = writeparam.iterator(), t = readparam.iterator();
 151                 boolean failed = false;
 152                 while (s.hasNext() && t.hasNext())
 153                 {
 154                   String on = o.next(), sn = s.next(), st = t.next();
 155                   if (!sn.equals(st))
 156                   {
 157                     System.out.println(
 158                             "Original was " + on + " Phase 1 wrote " + sn
 159                                     + "\tPhase 2 wrote " + st);
 160                     failed = true;
 161                   }
 162                 }
 163                 if (failed)
 164                 {
 165                   System.out.println(
 166                           "Original parameters:\n" + pr.getOptions());
 167                   System.out.println(
 168                           "Wrote parameters in first set:\n" + writeparam);
 169                   System.out.println(
 170                           "Wrote parameters in second set:\n" + readparam);
 171
 172                 }
 173               } catch (Exception e)
 174               {
 175                 e.printStackTrace();
 176               }
 177             }
 178             WsJobParameters pgui = new WsJobParameters(null, lastserv,
 179                     new JabaPreset(lastserv, pr), null);
 180             JFrame jf = new JFrame(MessageManager
 181                     .formatMessage("label.ws_parameters_for", new String[]
 182                     { lastserv.getActionText() }));
 183             JPanel cont = new JPanel(new BorderLayout());
 184             pgui.validate();
 185             cont.setPreferredSize(pgui.getPreferredSize());
 186             cont.add(pgui, BorderLayout.CENTER);
 187             jf.setLayout(new BorderLayout());
 188             jf.add(cont, BorderLayout.CENTER);
 189             jf.validate();
 190             final Thread thr = Thread.currentThread();
 191             jf.addWindowListener(new WindowListener()
 192             {
 193
 194               @Override
 195               public void windowActivated(WindowEvent e)
 196               {
 197                 // TODO Auto-generated method stub
 198
 199               }
 200
 201               @Override
 202               public void windowClosed(WindowEvent e)
 203               {
 204               }
 205
 206               @Override
 207               public void windowClosing(WindowEvent e)
 208               {
 209                 thr.interrupt();
 210
 211               }
 212
 213               @Override
 214               public void windowDeactivated(WindowEvent e)
 215               {
 216                 // TODO Auto-generated method stub
 217
 218               }
 219
 220               @Override
 221               public void windowDeiconified(WindowEvent e)
 222               {
 223                 // TODO Auto-generated method stub
 224
 225               }
 226
 227               @Override
 228               public void windowIconified(WindowEvent e)
 229               {
 230                 // TODO Auto-generated method stub
 231
 232               }
 233
 234               @Override
 235               public void windowOpened(WindowEvent e)
 236               {
 237                 // TODO Auto-generated method stub
 238
 239               }
 240
 241             });
 242             jf.setVisible(true);
 243             boolean inter = false;
 244             while (!inter)
 245             {
 246               try
 247               {
 248                 Thread.sleep(10000);
 249               } catch (Exception e)
 250               {
 251                 inter = true;
 252               }
 253               ;
 254             }
 255             jf.dispose();
 256           }
 257         }
 258       }
 259     }
 260   }
 261
 262 }