4 package jalview.ws.jws2;
6 import java.awt.event.ActionEvent;
7 import java.awt.event.ActionListener;
10 import javax.swing.JMenu;
11 import javax.swing.JMenuItem;
13 import compbio.metadata.Argument;
15 import jalview.api.AlignCalcWorkerI;
16 import jalview.datamodel.AlignmentView;
17 import jalview.gui.AlignFrame;
18 import jalview.gui.JvSwingUtils;
19 import jalview.ws.jws2.jabaws2.Jws2Instance;
20 import jalview.ws.params.WsParamSetI;
26 public class SequenceAnnotationWSClient extends Jws2Client
30 * initialise a client so its attachWSMenuEntry method can be called.
32 public SequenceAnnotationWSClient()
34 // TODO Auto-generated constructor stub
37 public SequenceAnnotationWSClient(final Jws2Instance sh,
38 AlignFrame alignFrame, WsParamSetI preset, boolean editParams)
40 super(alignFrame, preset, null);
41 List<AlignCalcWorkerI> clnts = alignFrame.getViewport()
43 .getRegisteredWorkersOfClass(AAConsClient.class);
44 if (clnts == null || clnts.size() == 0)
46 if (!processParams(sh, editParams))
54 new AAConsClient(sh, alignFrame, preset, paramset));
58 AAConsClient worker = (AAConsClient) clnts.get(0);
61 paramset = worker.getArguments();
62 preset = worker.getPreset();
65 if (!processParams(sh, editParams, true))
67 // reinstate worker if it was blacklisted (might have happened due to invalid parameters)
68 alignFrame.getViewport().getCalcManager().workerMayRun(worker);
69 worker.updateParameters(preset, paramset);
77 * @see jalview.ws.jws2.Jws2Client#attachWSMenuEntry(javax.swing.JMenu,
78 * jalview.ws.jws2.jabaws2.Jws2Instance, jalview.gui.AlignFrame)
80 public void attachWSMenuEntry(JMenu wsmenu, final Jws2Instance service,
81 final AlignFrame alignFrame)
83 if (service.serviceType.toLowerCase().contains("aaconws"))
85 boolean hasparams = service.hasParameters();
86 String calcName = "AACons";
87 System.out.println("Making an aacons client!");
88 JMenuItem aacons = new JMenuItem("AACons Defaults");
89 aacons.addActionListener(new ActionListener()
93 public void actionPerformed(ActionEvent e)
95 new SequenceAnnotationWSClient(service, alignFrame, null, false);
101 // only add these menu options if the service has user-modifiable
103 aacons = new JMenuItem("Edit settings and run ...");
104 aacons.setToolTipText("View and change the parameters before alignment.");
106 aacons.addActionListener(new ActionListener()
108 public void actionPerformed(ActionEvent e)
110 new SequenceAnnotationWSClient(service, alignFrame, null, true);
114 List<WsParamSetI> presets = service.getParamStore().getPresets();
115 if (presets != null && presets.size() > 0)
117 JMenu presetlist = new JMenu("Run " + calcName + "with preset");
119 for (final WsParamSetI preset : presets)
121 final JMenuItem methodR = new JMenuItem(preset.getName());
122 methodR.setToolTipText("<html><p>"
123 + JvSwingUtils.wrapTooltip("<strong>"
124 + (preset.isModifiable() ? "User Preset"
125 : "Service Preset") + "</strong><br/>"
126 + preset.getDescription() + "</p>") + "</html>");
127 methodR.addActionListener(new ActionListener()
129 public void actionPerformed(ActionEvent e)
131 new SequenceAnnotationWSClient(service, alignFrame, preset,
136 presetlist.add(methodR);
138 wsmenu.add(presetlist);