src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java

   1 package jalview.ws.jws2.jabaws2;
   2
   3 import java.util.HashMap;
   4
   5 import compbio.data.msa.JABAService;
   6
   7 import jalview.ws.jws2.AAConClient;
   8 import jalview.ws.jws2.RNAalifoldClient;
   9 import jalview.ws.uimodel.AlignAnalysisUIText;
  10
  11 public class Jws2InstanceFactory
  12 {
  13   private static HashMap<String, AlignAnalysisUIText> aaConGUI;
  14   private static String category_rewrite(String cat_name)
  15   {
  16     return (cat_name != null && cat_name.equals("Prediction")) ? "Secondary Structure Prediction" : cat_name;
  17   }
  18   private static void init()
  19   {
  20     if (aaConGUI == null)
  21     {
  22       aaConGUI = new HashMap<String, AlignAnalysisUIText>();
  23       aaConGUI.put(compbio.ws.client.Services.AAConWS.toString(),
  24               AAConClient.getAlignAnalysisUITest());
  25       aaConGUI.put(compbio.ws.client.Services.RNAalifoldWS.toString(),
  26               RNAalifoldClient.getAlignAnalysisUITest());
  27     }
  28   }
  29
  30   /**
  31    * construct a service instance and configure it with any additional
  32    * properties needed so Jalview can access it correctly
  33    *
  34    * @param jwsservers
  35    * @param serviceType
  36    * @param name
  37    * @param description
  38    * @param service
  39    * @return
  40    */
  41   public static Jws2Instance newJws2Instance(String jwsservers,
  42           String serviceType, String name, String description,
  43           JABAService service)
  44   {
  45     init();
  46     Jws2Instance svc = new Jws2Instance(jwsservers, serviceType, category_rewrite(name),
  47             description, service);
  48
  49     svc.aaui = aaConGUI.get(serviceType.toString());
  50     return svc;
  51   }
  52
  53 }