2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.ws.jws2.jabaws2;
23 import jalview.ws.jws2.AAConClient;
24 import jalview.ws.jws2.RNAalifoldClient;
25 import jalview.ws.uimodel.AlignAnalysisUIText;
27 import java.util.HashMap;
28 import java.util.HashSet;
30 import compbio.data.msa.JABAService;
32 public class Jws2InstanceFactory
34 private static HashMap<String, AlignAnalysisUIText> aaConGUI;
36 private static HashSet<String> ignoreGUI;
38 private static String category_rewrite(String cat_name)
40 return (cat_name != null && cat_name.equals("Prediction"))
41 ? "Secondary Structure Prediction"
45 private static void init()
49 aaConGUI = new HashMap<String, AlignAnalysisUIText>();
50 aaConGUI.put(compbio.ws.client.Services.AAConWS.toString(),
51 AAConClient.getAlignAnalysisUITest());
52 aaConGUI.put(compbio.ws.client.Services.RNAalifoldWS.toString(),
53 RNAalifoldClient.getAlignAnalysisUITest());
54 // ignore list for JABAWS services not supported in jalview ...
55 ignoreGUI = new HashSet<String>();
60 * exclusion list to avoid creating GUI elements for services we don't fully
66 public static boolean ignoreService(String serviceType)
69 return (ignoreGUI.contains(serviceType.toString()));
73 * construct a service instance and configure it with any additional
74 * properties needed so Jalview can access it correctly
83 public static Jws2Instance newJws2Instance(String jwsservers,
84 String serviceType, String name, String description,
88 Jws2Instance svc = new Jws2Instance(jwsservers, serviceType,
89 category_rewrite(name), description, service);
90 svc.aaui = aaConGUI.get(serviceType.toString());