2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
3 * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
18 package jalview.ws.rest.params;
20 import jalview.ws.params.OptionI;
21 import jalview.ws.rest.InputType;
22 import jalview.ws.rest.RestJob;
24 import java.io.UnsupportedEncodingException;
25 import java.util.ArrayList;
26 import java.util.List;
28 import org.apache.http.entity.mime.content.ContentBody;
31 * format a tree for input to a rest service
36 public class Tree extends InputType
41 { jalview.analysis.NJTree.class });
44 // TODO specify modifiers for tree output format
46 public ContentBody formatForInput(RestJob rj)
47 throws UnsupportedEncodingException
49 // TODO: implement tree inputType
51 * rj.getTreeForInput(token); return new StringBody(new )
53 throw new Error("Tree InputType not yet implemented");
57 public String getURLtokenPrefix()
63 public List<String> getURLEncodedParameter()
65 ArrayList<String> prms = new ArrayList<String>();
66 super.addBaseParams(prms);
71 public boolean configureProperty(String tok, String val,
72 StringBuffer warnings)
78 public List<OptionI> getOptions()
80 return getBaseOptions();