2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.ws.rest.params;
23 import jalview.ws.params.OptionI;
24 import jalview.ws.rest.InputType;
25 import jalview.ws.rest.RestJob;
27 import java.io.UnsupportedEncodingException;
28 import java.util.ArrayList;
29 import java.util.List;
31 import org.apache.http.entity.mime.content.ContentBody;
34 * format a tree for input to a rest service
39 public class Tree extends InputType
44 { jalview.analysis.NJTree.class });
47 // TODO specify modifiers for tree output format
49 public ContentBody formatForInput(RestJob rj)
50 throws UnsupportedEncodingException
52 // TODO: implement tree inputType
54 * rj.getTreeForInput(token); return new StringBody(new )
56 throw new Error("Tree InputType not yet implemented");
60 public String getURLtokenPrefix()
66 public List<String> getURLEncodedParameter()
68 ArrayList<String> prms = new ArrayList<String>();
69 super.addBaseParams(prms);
74 public boolean configureProperty(String tok, String val,
75 StringBuffer warnings)
81 public List<OptionI> getOptions()
83 return getBaseOptions();