src/jalview/ws/uimodel/PDBSummaryListModel.java

   1 package jalview.ws.uimodel;
   2
   3 import javax.swing.DefaultListModel;
   4
   5 import org.json.simple.JSONObject;
   6
   7
   8 @SuppressWarnings(
   9 { "serial", "rawtypes" })
  10 public class PDBSummaryListModel extends DefaultListModel
  11 {
  12   private String pdbId;
  13
  14   private String summary;
  15
  16   private int width = 480;
  17
  18   public PDBSummaryListModel(String pdbId, String summary)
  19   {
  20     this.pdbId = pdbId;
  21     this.summary = summary;
  22   }
  23
  24   public PDBSummaryListModel(JSONObject doc)
  25   {
  26     StringBuilder summary = new StringBuilder();
  27     if (doc.get("molecule_type") != null)
  28     {
  29       String moleculeType = doc.get("molecule_type").toString();
  30       if (moleculeType.equalsIgnoreCase("protein"))
  31       {
  32         summary.append("<img src=\""
  33                 + getClass().getResource("/images/protein.png").toString()
  34                 + "\">");
  35       }
  36       if (moleculeType.equalsIgnoreCase("dna"))
  37       {
  38         summary.append("<img src=\""
  39                 + getClass().getResource("/images/dna.png").toString()
  40                 + "\">");
  41       }
  42       if (moleculeType.equalsIgnoreCase("rna"))
  43       {
  44         summary.append("<img src=\""
  45                 + getClass().getResource("/images/dna.png").toString()
  46                 + "\">");
  47       }
  48       if (moleculeType.equalsIgnoreCase("sugar"))
  49       {
  50         summary.append("<img src=\""
  51                 + getClass().getResource("/images/sugar.png").toString()
  52                 + "\">");
  53       }
  54     }
  55     this.pdbId = doc.get("pdb_id").toString();
  56     summary.append("PDB ID: ").append(pdbId);
  57
  58
  59     if (doc.get("molecule_name") != null)
  60     {
  61       summary.append(" | Molecule Name: ").append(doc.get("molecule_name"));
  62     }
  63     if (doc.get("gene_name") != null)
  64     {
  65       summary.append(" | Gene Name: ").append(doc.get("gene_name"));
  66     }
  67     if (doc.get("genus") != null)
  68     {
  69       summary.append(" | Genus: ").append(doc.get("genus"));
  70     }
  71     if (doc.get("title") != null)
  72     {
  73       summary.append(" | Title: ").append(doc.get("title"));
  74     }
  75     this.summary = summary.toString();
  76   }
  77
  78   public String getPdbId()
  79   {
  80     return pdbId;
  81   }
  82
  83   public void setPdbId(String pdbId)
  84   {
  85     this.pdbId = pdbId;
  86   }
  87
  88   public String getSummary()
  89   {
  90     return summary;
  91   }
  92
  93   public void setSummary(String summary)
  94   {
  95     this.summary = summary;
  96   }
  97
  98   public String toString()
  99   {
 100     StringBuilder html = new StringBuilder();
 101     html.append("<html><div style=\"width:" + width
 102             + "; word-wrap: break-word; border-bottom-style: dotted;\"> ");
 103     html.append(summary);
 104     html.append("</div></html>");
 105     return html.toString();
 106   }
 107
 108 }