2 // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
3 // See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
4 // Any modifications to this file will be lost upon recompilation of the source schema.
5 // Generated on: 2023.08.28 at 01:52:46 PM BST
9 package jalview.xml.binding.jalview;
11 import java.math.BigInteger;
12 import java.util.ArrayList;
13 import java.util.List;
14 import javax.xml.bind.annotation.XmlAccessType;
15 import javax.xml.bind.annotation.XmlAccessorType;
16 import javax.xml.bind.annotation.XmlAttribute;
17 import javax.xml.bind.annotation.XmlElement;
18 import javax.xml.bind.annotation.XmlType;
22 * Represents matrix data imported to Jalview, and the
23 * results of any derived calculations (independent of a particular
28 * <p>Java class for MatrixType complex type.
30 * <p>The following schema fragment specifies the expected content contained within this class.
33 * <complexType name="MatrixType">
35 * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
37 * <element name="elements" type="{http://www.w3.org/2001/XMLSchema}string"/>
38 * <element name="groups" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
39 * <element name="newick" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
40 * <element name="property" type="{www.vamsas.ac.uk/jalview/version2}property" maxOccurs="unbounded" minOccurs="0"/>
42 * <attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
43 * <attribute name="rows" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
44 * <attribute name="cols" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
45 * <attribute name="treeMethod" type="{http://www.w3.org/2001/XMLSchema}string" />
46 * <attribute name="cutHeight" type="{http://www.w3.org/2001/XMLSchema}double" />
47 * <attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
49 * </complexContent>
55 @XmlAccessorType(XmlAccessType.FIELD)
56 @XmlType(name = "MatrixType", propOrder = {
62 public class MatrixType {
64 @XmlElement(required = true)
65 protected String elements;
66 protected List<String> groups;
67 protected List<String> newick;
68 protected List<Property> property;
69 @XmlAttribute(name = "type", required = true)
70 protected String type;
71 @XmlAttribute(name = "rows", required = true)
72 protected BigInteger rows;
73 @XmlAttribute(name = "cols", required = true)
74 protected BigInteger cols;
75 @XmlAttribute(name = "treeMethod")
76 protected String treeMethod;
77 @XmlAttribute(name = "cutHeight")
78 protected Double cutHeight;
79 @XmlAttribute(name = "id", required = true)
83 * Gets the value of the elements property.
90 public String getElements() {
95 * Sets the value of the elements property.
102 public void setElements(String value) {
103 this.elements = value;
107 * Gets the value of the groups property.
110 * This accessor method returns a reference to the live list,
111 * not a snapshot. Therefore any modification you make to the
112 * returned list will be present inside the JAXB object.
113 * This is why there is not a <CODE>set</CODE> method for the groups property.
116 * For example, to add a new item, do as follows:
118 * getGroups().add(newItem);
123 * Objects of the following type(s) are allowed in the list
128 public List<String> getGroups() {
129 if (groups == null) {
130 groups = new ArrayList<String>();
136 * Gets the value of the newick property.
139 * This accessor method returns a reference to the live list,
140 * not a snapshot. Therefore any modification you make to the
141 * returned list will be present inside the JAXB object.
142 * This is why there is not a <CODE>set</CODE> method for the newick property.
145 * For example, to add a new item, do as follows:
147 * getNewick().add(newItem);
152 * Objects of the following type(s) are allowed in the list
157 public List<String> getNewick() {
158 if (newick == null) {
159 newick = new ArrayList<String>();
165 * Gets the value of the property property.
168 * This accessor method returns a reference to the live list,
169 * not a snapshot. Therefore any modification you make to the
170 * returned list will be present inside the JAXB object.
171 * This is why there is not a <CODE>set</CODE> method for the property property.
174 * For example, to add a new item, do as follows:
176 * getProperty().add(newItem);
181 * Objects of the following type(s) are allowed in the list
186 public List<Property> getProperty() {
187 if (property == null) {
188 property = new ArrayList<Property>();
190 return this.property;
194 * Gets the value of the type property.
201 public String getType() {
206 * Sets the value of the type property.
213 public void setType(String value) {
218 * Gets the value of the rows property.
222 * {@link BigInteger }
225 public BigInteger getRows() {
230 * Sets the value of the rows property.
234 * {@link BigInteger }
237 public void setRows(BigInteger value) {
242 * Gets the value of the cols property.
246 * {@link BigInteger }
249 public BigInteger getCols() {
254 * Sets the value of the cols property.
258 * {@link BigInteger }
261 public void setCols(BigInteger value) {
266 * Gets the value of the treeMethod property.
273 public String getTreeMethod() {
278 * Sets the value of the treeMethod property.
285 public void setTreeMethod(String value) {
286 this.treeMethod = value;
290 * Gets the value of the cutHeight property.
297 public Double getCutHeight() {
302 * Sets the value of the cutHeight property.
309 public void setCutHeight(Double value) {
310 this.cutHeight = value;
314 * Gets the value of the id property.
321 public String getId() {
326 * Sets the value of the id property.
333 public void setId(String value) {