2 // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
3 // See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
4 // Any modifications to this file will be lost upon recompilation of the source schema.
5 // Generated on: 2023.05.13 at 06:58:41 PM BST
8 package jalview.xml.binding.jalview;
10 import java.util.ArrayList;
11 import java.util.List;
12 import javax.xml.bind.annotation.XmlAccessType;
13 import javax.xml.bind.annotation.XmlAccessorType;
14 import javax.xml.bind.annotation.XmlAttribute;
15 import javax.xml.bind.annotation.XmlElement;
16 import javax.xml.bind.annotation.XmlRootElement;
17 import javax.xml.bind.annotation.XmlType;
21 * Java class for anonymous complex type.
24 * The following schema fragment specifies the expected content contained within
30 * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
32 * <element ref="{www.vamsas.ac.uk/jalview/version2}Sequence" maxOccurs="unbounded" minOccurs="0"/>
33 * <element ref="{www.vamsas.ac.uk/jalview/version2}Annotation" maxOccurs="unbounded" minOccurs="0"/>
34 * <element name="sequenceSetProperties" maxOccurs="unbounded" minOccurs="0">
37 * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
38 * <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
39 * <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
41 * </complexContent>
44 * <element ref="{www.vamsas.ac.uk/jalview/version2}AlcodonFrame" maxOccurs="unbounded" minOccurs="0"/>
46 * <attribute name="gapChar" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
47 * <attribute name="datasetId" type="{http://www.w3.org/2001/XMLSchema}string" />
49 * </complexContent>
55 @XmlAccessorType(XmlAccessType.FIELD)
59 { "sequence", "annotation", "sequenceSetProperties", "alcodonFrame" })
60 @XmlRootElement(name = "SequenceSet")
61 public class SequenceSet
64 @XmlElement(name = "Sequence")
65 protected List<Sequence> sequence;
67 @XmlElement(name = "Annotation")
68 protected List<Annotation> annotation;
70 protected List<SequenceSet.SequenceSetProperties> sequenceSetProperties;
72 @XmlElement(name = "AlcodonFrame")
73 protected List<AlcodonFrame> alcodonFrame;
75 @XmlAttribute(name = "gapChar", required = true)
76 protected String gapChar;
78 @XmlAttribute(name = "datasetId")
79 protected String datasetId;
82 * Gets the value of the sequence property.
85 * This accessor method returns a reference to the live list, not a snapshot.
86 * Therefore any modification you make to the returned list will be present
87 * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
88 * for the sequence property.
91 * For example, to add a new item, do as follows:
94 * getSequence().add(newItem);
99 * Objects of the following type(s) are allowed in the list {@link Sequence }
103 public List<Sequence> getSequence()
105 if (sequence == null)
107 sequence = new ArrayList<Sequence>();
109 return this.sequence;
113 * Gets the value of the annotation property.
116 * This accessor method returns a reference to the live list, not a snapshot.
117 * Therefore any modification you make to the returned list will be present
118 * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
119 * for the annotation property.
122 * For example, to add a new item, do as follows:
125 * getAnnotation().add(newItem);
130 * Objects of the following type(s) are allowed in the list {@link Annotation
135 public List<Annotation> getAnnotation()
137 if (annotation == null)
139 annotation = new ArrayList<Annotation>();
141 return this.annotation;
145 * Gets the value of the sequenceSetProperties property.
148 * This accessor method returns a reference to the live list, not a snapshot.
149 * Therefore any modification you make to the returned list will be present
150 * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
151 * for the sequenceSetProperties property.
154 * For example, to add a new item, do as follows:
157 * getSequenceSetProperties().add(newItem);
162 * Objects of the following type(s) are allowed in the list
163 * {@link SequenceSet.SequenceSetProperties }
167 public List<SequenceSet.SequenceSetProperties> getSequenceSetProperties()
169 if (sequenceSetProperties == null)
171 sequenceSetProperties = new ArrayList<SequenceSet.SequenceSetProperties>();
173 return this.sequenceSetProperties;
177 * Gets the value of the alcodonFrame property.
180 * This accessor method returns a reference to the live list, not a snapshot.
181 * Therefore any modification you make to the returned list will be present
182 * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
183 * for the alcodonFrame property.
186 * For example, to add a new item, do as follows:
189 * getAlcodonFrame().add(newItem);
194 * Objects of the following type(s) are allowed in the list
195 * {@link AlcodonFrame }
199 public List<AlcodonFrame> getAlcodonFrame()
201 if (alcodonFrame == null)
203 alcodonFrame = new ArrayList<AlcodonFrame>();
205 return this.alcodonFrame;
209 * Gets the value of the gapChar property.
211 * @return possible object is {@link String }
214 public String getGapChar()
220 * Sets the value of the gapChar property.
223 * allowed object is {@link String }
226 public void setGapChar(String value)
228 this.gapChar = value;
232 * Gets the value of the datasetId property.
234 * @return possible object is {@link String }
237 public String getDatasetId()
243 * Sets the value of the datasetId property.
246 * allowed object is {@link String }
249 public void setDatasetId(String value)
251 this.datasetId = value;
256 * Java class for anonymous complex type.
259 * The following schema fragment specifies the expected content contained
264 * <complexContent>
265 * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
266 * <attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
267 * <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
269 * </complexContent>
275 @XmlAccessorType(XmlAccessType.FIELD)
277 public static class SequenceSetProperties
280 @XmlAttribute(name = "key")
281 protected String key;
283 @XmlAttribute(name = "value")
284 protected String value;
287 * Gets the value of the key property.
289 * @return possible object is {@link String }
292 public String getKey()
298 * Sets the value of the key property.
301 * allowed object is {@link String }
304 public void setKey(String value)
310 * Gets the value of the value property.
312 * @return possible object is {@link String }
315 public String getValue()
321 * Sets the value of the value property.
324 * allowed object is {@link String }
327 public void setValue(String value)