src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java

   1 /*\r
   2  * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
   3  * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
   4  * \r
   5  * This program is free software; you can redistribute it and/or\r
   6  * modify it under the terms of the GNU General Public License\r
   7  * as published by the Free Software Foundation; either version 2\r
   8  * of the License, or (at your option) any later version.\r
   9  * \r
  10  * This program is distributed in the hope that it will be useful,\r
  11  * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
  12  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
  13  * GNU General Public License for more details.\r
  14  * \r
  15  * You should have received a copy of the GNU General Public License\r
  16  * along with this program; if not, write to the Free Software\r
  17  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
  18  */\r
  19 package uk.ac.ebi.www.picr.AccessionMappingService;\r
  20 \r
  21 public class AccessionMapperBindingStub extends org.apache.axis.client.Stub\r
  22         implements\r
  23         uk.ac.ebi.www.picr.AccessionMappingService.AccessionMapperInterface\r
  24 {\r
  25   private java.util.Vector cachedSerClasses = new java.util.Vector();\r
  26 \r
  27   private java.util.Vector cachedSerQNames = new java.util.Vector();\r
  28 \r
  29   private java.util.Vector cachedSerFactories = new java.util.Vector();\r
  30 \r
  31   private java.util.Vector cachedDeserFactories = new java.util.Vector();\r
  32 \r
  33   static org.apache.axis.description.OperationDesc[] _operations;\r
  34 \r
  35   static\r
  36   {\r
  37     _operations = new org.apache.axis.description.OperationDesc[3];\r
  38     _initOperationDesc1();\r
  39   }\r
  40 \r
  41   private static void _initOperationDesc1()\r
  42   {\r
  43     org.apache.axis.description.OperationDesc oper;\r
  44     oper = new org.apache.axis.description.OperationDesc();\r
  45     oper.setName("getUPIForSequence");\r
  46     oper.addParameter(\r
  47             new javax.xml.namespace.QName(\r
  48                     "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
  49                     "sequence"), new javax.xml.namespace.QName(\r
  50                     "http://www.w3.org/2001/XMLSchema", "string"),\r
  51             java.lang.String.class,\r
  52             org.apache.axis.description.ParameterDesc.IN, false, false);\r
  53     oper.addParameter(new javax.xml.namespace.QName(\r
  54             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
  55             "searchDatabases"), new javax.xml.namespace.QName(\r
  56             "http://www.w3.org/2001/XMLSchema", "string"),\r
  57             java.lang.String[].class,\r
  58             org.apache.axis.description.ParameterDesc.IN, false, false);\r
  59     oper.addParameter(\r
  60             new javax.xml.namespace.QName(\r
  61                     "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
  62                     "taxonId"), new javax.xml.namespace.QName(\r
  63                     "http://www.w3.org/2001/XMLSchema", "string"),\r
  64             java.lang.String.class,\r
  65             org.apache.axis.description.ParameterDesc.IN, false, false);\r
  66     oper.addParameter(new javax.xml.namespace.QName(\r
  67             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
  68             "onlyActive"), new javax.xml.namespace.QName(\r
  69             "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,\r
  70             org.apache.axis.description.ParameterDesc.IN, false, false);\r
  71     oper.setReturnType(new javax.xml.namespace.QName(\r
  72             "http://model.picr.ebi.ac.uk", "UPEntry"));\r
  73     oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry.class);\r
  74     oper.setReturnQName(new javax.xml.namespace.QName(\r
  75             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
  76             "getUPIForSequenceReturn"));\r
  77     oper.setStyle(org.apache.axis.constants.Style.WRAPPED);\r
  78     oper.setUse(org.apache.axis.constants.Use.LITERAL);\r
  79     _operations[0] = oper;\r
  80 \r
  81     oper = new org.apache.axis.description.OperationDesc();\r
  82     oper.setName("getUPIForAccession");\r
  83     oper.addParameter(new javax.xml.namespace.QName(\r
  84             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
  85             "accession"), new javax.xml.namespace.QName(\r
  86             "http://www.w3.org/2001/XMLSchema", "string"),\r
  87             java.lang.String.class,\r
  88             org.apache.axis.description.ParameterDesc.IN, false, false);\r
  89     oper.addParameter(new javax.xml.namespace.QName(\r
  90             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
  91             "ac_version"), new javax.xml.namespace.QName(\r
  92             "http://www.w3.org/2001/XMLSchema", "string"),\r
  93             java.lang.String.class,\r
  94             org.apache.axis.description.ParameterDesc.IN, false, false);\r
  95     oper.addParameter(new javax.xml.namespace.QName(\r
  96             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
  97             "searchDatabases"), new javax.xml.namespace.QName(\r
  98             "http://www.w3.org/2001/XMLSchema", "string"),\r
  99             java.lang.String[].class,\r
 100             org.apache.axis.description.ParameterDesc.IN, false, false);\r
 101     oper.addParameter(\r
 102             new javax.xml.namespace.QName(\r
 103                     "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
 104                     "taxonId"), new javax.xml.namespace.QName(\r
 105                     "http://www.w3.org/2001/XMLSchema", "string"),\r
 106             java.lang.String.class,\r
 107             org.apache.axis.description.ParameterDesc.IN, false, false);\r
 108     oper.addParameter(new javax.xml.namespace.QName(\r
 109             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
 110             "onlyActive"), new javax.xml.namespace.QName(\r
 111             "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,\r
 112             org.apache.axis.description.ParameterDesc.IN, false, false);\r
 113     oper.setReturnType(new javax.xml.namespace.QName(\r
 114             "http://model.picr.ebi.ac.uk", "UPEntry"));\r
 115     oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry[].class);\r
 116     oper.setReturnQName(new javax.xml.namespace.QName(\r
 117             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
 118             "getUPIForAccessionReturn"));\r
 119     oper.setStyle(org.apache.axis.constants.Style.WRAPPED);\r
 120     oper.setUse(org.apache.axis.constants.Use.LITERAL);\r
 121     _operations[1] = oper;\r
 122 \r
 123     oper = new org.apache.axis.description.OperationDesc();\r
 124     oper.setName("getMappedDatabaseNames");\r
 125     oper.setReturnType(new javax.xml.namespace.QName(\r
 126             "http://www.w3.org/2001/XMLSchema", "string"));\r
 127     oper.setReturnClass(java.lang.String[].class);\r
 128     oper.setReturnQName(new javax.xml.namespace.QName(\r
 129             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
 130             "mappedDatabases"));\r
 131     oper.setStyle(org.apache.axis.constants.Style.WRAPPED);\r
 132     oper.setUse(org.apache.axis.constants.Use.LITERAL);\r
 133     _operations[2] = oper;\r
 134 \r
 135   }\r
 136 \r
 137   public AccessionMapperBindingStub() throws org.apache.axis.AxisFault\r
 138   {\r
 139     this(null);\r
 140   }\r
 141 \r
 142   public AccessionMapperBindingStub(java.net.URL endpointURL,\r
 143           javax.xml.rpc.Service service) throws org.apache.axis.AxisFault\r
 144   {\r
 145     this(service);\r
 146     super.cachedEndpoint = endpointURL;\r
 147   }\r
 148 \r
 149   public AccessionMapperBindingStub(javax.xml.rpc.Service service)\r
 150           throws org.apache.axis.AxisFault\r
 151   {\r
 152     if (service == null)\r
 153     {\r
 154       super.service = new org.apache.axis.client.Service();\r
 155     }\r
 156     else\r
 157     {\r
 158       super.service = service;\r
 159     }\r
 160     java.lang.Class cls;\r
 161     javax.xml.namespace.QName qName;\r
 162     java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;\r
 163     java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;\r
 164     java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;\r
 165     java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;\r
 166     java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;\r
 167     java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;\r
 168     java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;\r
 169     java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;\r
 170     java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;\r
 171     java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;\r
 172     qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",\r
 173             "UPEntry");\r
 174     cachedSerQNames.add(qName);\r
 175     cls = uk.ac.ebi.picr.model.UPEntry.class;\r
 176     cachedSerClasses.add(cls);\r
 177     cachedSerFactories.add(beansf);\r
 178     cachedDeserFactories.add(beandf);\r
 179 \r
 180     qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",\r
 181             "CrossReference");\r
 182     cachedSerQNames.add(qName);\r
 183     cls = uk.ac.ebi.picr.model.CrossReference.class;\r
 184     cachedSerClasses.add(cls);\r
 185     cachedSerFactories.add(beansf);\r
 186     cachedDeserFactories.add(beandf);\r
 187 \r
 188   }\r
 189 \r
 190   protected org.apache.axis.client.Call createCall()\r
 191           throws java.rmi.RemoteException\r
 192   {\r
 193     try\r
 194     {\r
 195       org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service\r
 196               .createCall();\r
 197       if (super.maintainSessionSet)\r
 198       {\r
 199         _call.setMaintainSession(super.maintainSession);\r
 200       }\r
 201       if (super.cachedUsername != null)\r
 202       {\r
 203         _call.setUsername(super.cachedUsername);\r
 204       }\r
 205       if (super.cachedPassword != null)\r
 206       {\r
 207         _call.setPassword(super.cachedPassword);\r
 208       }\r
 209       if (super.cachedEndpoint != null)\r
 210       {\r
 211         _call.setTargetEndpointAddress(super.cachedEndpoint);\r
 212       }\r
 213       if (super.cachedTimeout != null)\r
 214       {\r
 215         _call.setTimeout(super.cachedTimeout);\r
 216       }\r
 217       if (super.cachedPortName != null)\r
 218       {\r
 219         _call.setPortName(super.cachedPortName);\r
 220       }\r
 221       java.util.Enumeration keys = super.cachedProperties.keys();\r
 222       while (keys.hasMoreElements())\r
 223       {\r
 224         java.lang.String key = (java.lang.String) keys.nextElement();\r
 225         _call.setProperty(key, super.cachedProperties.get(key));\r
 226       }\r
 227       // All the type mapping information is registered\r
 228       // when the first call is made.\r
 229       // The type mapping information is actually registered in\r
 230       // the TypeMappingRegistry of the service, which\r
 231       // is the reason why registration is only needed for the first call.\r
 232       synchronized (this)\r
 233       {\r
 234         if (firstCall())\r
 235         {\r
 236           // must set encoding style before registering serializers\r
 237           _call.setEncodingStyle(null);\r
 238           for (int i = 0; i < cachedSerFactories.size(); ++i)\r
 239           {\r
 240             java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);\r
 241             javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames\r
 242                     .get(i);\r
 243             java.lang.Class sf = (java.lang.Class) cachedSerFactories\r
 244                     .get(i);\r
 245             java.lang.Class df = (java.lang.Class) cachedDeserFactories\r
 246                     .get(i);\r
 247             _call.registerTypeMapping(cls, qName, sf, df, false);\r
 248           }\r
 249         }\r
 250       }\r
 251       return _call;\r
 252     } catch (java.lang.Throwable _t)\r
 253     {\r
 254       throw new org.apache.axis.AxisFault(\r
 255               "Failure trying to get the Call object", _t);\r
 256     }\r
 257   }\r
 258 \r
 259   public uk.ac.ebi.picr.model.UPEntry getUPIForSequence(\r
 260           java.lang.String sequence, java.lang.String[] searchDatabases,\r
 261           java.lang.String taxonId, boolean onlyActive)\r
 262           throws java.rmi.RemoteException\r
 263   {\r
 264     if (super.cachedEndpoint == null)\r
 265     {\r
 266       throw new org.apache.axis.NoEndPointException();\r
 267     }\r
 268     org.apache.axis.client.Call _call = createCall();\r
 269     _call.setOperation(_operations[0]);\r
 270     _call.setUseSOAPAction(true);\r
 271     _call.setSOAPActionURI("getUPIForSequence");\r
 272     _call.setEncodingStyle(null);\r
 273     _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,\r
 274             Boolean.FALSE);\r
 275     _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,\r
 276             Boolean.FALSE);\r
 277     _call\r
 278             .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
 279     _call.setOperationName(new javax.xml.namespace.QName(\r
 280             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
 281             "getUPIForSequence"));\r
 282 \r
 283     setRequestHeaders(_call);\r
 284     setAttachments(_call);\r
 285     java.lang.Object _resp = _call\r
 286             .invoke(new java.lang.Object[]\r
 287             { sequence, searchDatabases, taxonId,\r
 288                 new java.lang.Boolean(onlyActive) });\r
 289 \r
 290     if (_resp instanceof java.rmi.RemoteException)\r
 291     {\r
 292       throw (java.rmi.RemoteException) _resp;\r
 293     }\r
 294     else\r
 295     {\r
 296       extractAttachments(_call);\r
 297       try\r
 298       {\r
 299         return (uk.ac.ebi.picr.model.UPEntry) _resp;\r
 300       } catch (java.lang.Exception _exception)\r
 301       {\r
 302         return (uk.ac.ebi.picr.model.UPEntry) org.apache.axis.utils.JavaUtils\r
 303                 .convert(_resp, uk.ac.ebi.picr.model.UPEntry.class);\r
 304       }\r
 305     }\r
 306   }\r
 307 \r
 308   public uk.ac.ebi.picr.model.UPEntry[] getUPIForAccession(\r
 309           java.lang.String accession, java.lang.String ac_version,\r
 310           java.lang.String[] searchDatabases, java.lang.String taxonId,\r
 311           boolean onlyActive) throws java.rmi.RemoteException\r
 312   {\r
 313     if (super.cachedEndpoint == null)\r
 314     {\r
 315       throw new org.apache.axis.NoEndPointException();\r
 316     }\r
 317     org.apache.axis.client.Call _call = createCall();\r
 318     _call.setOperation(_operations[1]);\r
 319     _call.setUseSOAPAction(true);\r
 320     _call.setSOAPActionURI("getUPIForAccession");\r
 321     _call.setEncodingStyle(null);\r
 322     _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,\r
 323             Boolean.FALSE);\r
 324     _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,\r
 325             Boolean.FALSE);\r
 326     _call\r
 327             .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
 328     _call.setOperationName(new javax.xml.namespace.QName(\r
 329             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
 330             "getUPIForAccession"));\r
 331 \r
 332     setRequestHeaders(_call);\r
 333     setAttachments(_call);\r
 334     java.lang.Object _resp = _call.invoke(new java.lang.Object[]\r
 335     { accession, ac_version, searchDatabases, taxonId,\r
 336         new java.lang.Boolean(onlyActive) });\r
 337 \r
 338     if (_resp instanceof java.rmi.RemoteException)\r
 339     {\r
 340       throw (java.rmi.RemoteException) _resp;\r
 341     }\r
 342     else\r
 343     {\r
 344       extractAttachments(_call);\r
 345       try\r
 346       {\r
 347         return (uk.ac.ebi.picr.model.UPEntry[]) _resp;\r
 348       } catch (java.lang.Exception _exception)\r
 349       {\r
 350         return (uk.ac.ebi.picr.model.UPEntry[]) org.apache.axis.utils.JavaUtils\r
 351                 .convert(_resp, uk.ac.ebi.picr.model.UPEntry[].class);\r
 352       }\r
 353     }\r
 354   }\r
 355 \r
 356   public java.lang.String[] getMappedDatabaseNames()\r
 357           throws java.rmi.RemoteException\r
 358   {\r
 359     if (super.cachedEndpoint == null)\r
 360     {\r
 361       throw new org.apache.axis.NoEndPointException();\r
 362     }\r
 363     org.apache.axis.client.Call _call = createCall();\r
 364     _call.setOperation(_operations[2]);\r
 365     _call.setUseSOAPAction(true);\r
 366     _call.setSOAPActionURI("getMappedDatabaseNames");\r
 367     _call.setEncodingStyle(null);\r
 368     _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,\r
 369             Boolean.FALSE);\r
 370     _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,\r
 371             Boolean.FALSE);\r
 372     _call\r
 373             .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
 374     _call.setOperationName(new javax.xml.namespace.QName(\r
 375             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
 376             "getMappedDatabaseNames"));\r
 377 \r
 378     setRequestHeaders(_call);\r
 379     setAttachments(_call);\r
 380     java.lang.Object _resp = _call.invoke(new java.lang.Object[]\r
 381     {});\r
 382 \r
 383     if (_resp instanceof java.rmi.RemoteException)\r
 384     {\r
 385       throw (java.rmi.RemoteException) _resp;\r
 386     }\r
 387     else\r
 388     {\r
 389       extractAttachments(_call);\r
 390       try\r
 391       {\r
 392         return (java.lang.String[]) _resp;\r
 393       } catch (java.lang.Exception _exception)\r
 394       {\r
 395         return (java.lang.String[]) org.apache.axis.utils.JavaUtils\r
 396                 .convert(_resp, java.lang.String[].class);\r
 397       }\r
 398     }\r
 399   }\r
 400 \r
 401 }\r