2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package vamsas.objects.simple;
23 public class Alignment_Helper
26 private static org.apache.axis.description.TypeDesc typeDesc = new org.apache.axis.description.TypeDesc(
27 Alignment.class, true);
31 typeDesc.setXmlType(new javax.xml.namespace.QName(
32 "simple.objects.vamsas", "Alignment"));
33 org.apache.axis.description.ElementDesc elemField = new org.apache.axis.description.ElementDesc();
34 elemField.setFieldName("gapchar");
35 elemField.setXmlName(new javax.xml.namespace.QName("", "gapchar"));
36 elemField.setXmlType(new javax.xml.namespace.QName(
37 "http://schemas.xmlsoap.org/soap/encoding/", "string"));
38 typeDesc.addFieldDesc(elemField);
39 elemField = new org.apache.axis.description.ElementDesc();
40 elemField.setFieldName("method");
41 elemField.setXmlName(new javax.xml.namespace.QName("", "method"));
42 elemField.setXmlType(new javax.xml.namespace.QName(
43 "http://schemas.xmlsoap.org/soap/encoding/", "string"));
44 typeDesc.addFieldDesc(elemField);
45 elemField = new org.apache.axis.description.ElementDesc();
46 elemField.setFieldName("seqs");
47 elemField.setXmlName(new javax.xml.namespace.QName("", "seqs"));
48 elemField.setXmlType(new javax.xml.namespace.QName(
49 "simple.objects.vamsas", "SequenceSet"));
50 typeDesc.addFieldDesc(elemField);
54 * Return type metadata object
56 public static org.apache.axis.description.TypeDesc getTypeDesc()
62 * Get Custom Serializer
64 public static org.apache.axis.encoding.Serializer getSerializer(
65 java.lang.String mechType, java.lang.Class _javaType,
66 javax.xml.namespace.QName _xmlType)
68 return new org.apache.axis.encoding.ser.BeanSerializer(_javaType,
73 * Get Custom Deserializer
75 public static org.apache.axis.encoding.Deserializer getDeserializer(
76 java.lang.String mechType, java.lang.Class _javaType,
77 javax.xml.namespace.QName _xmlType)
79 return new org.apache.axis.encoding.ser.BeanDeserializer(_javaType,