2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
3 * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
5 * This program is free software; you can redistribute it and/or
6 * modify it under the terms of the GNU General Public License
7 * as published by the Free Software Foundation; either version 2
8 * of the License, or (at your option) any later version.
10 * This program is distributed in the hope that it will be useful,
11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
13 * GNU General Public License for more details.
15 * You should have received a copy of the GNU General Public License
16 * along with this program; if not, write to the Free Software
17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
19 package vamsas.objects.simple;
21 public class SequenceSet implements java.io.Serializable
23 private vamsas.objects.simple.Sequence[] seqs;
29 public SequenceSet(vamsas.objects.simple.Sequence[] seqs)
35 * Gets the seqs value for this SequenceSet.
39 public vamsas.objects.simple.Sequence[] getSeqs()
45 * Sets the seqs value for this SequenceSet.
49 public void setSeqs(vamsas.objects.simple.Sequence[] seqs)
54 private java.lang.Object __equalsCalc = null;
56 public synchronized boolean equals(java.lang.Object obj)
58 if (!(obj instanceof SequenceSet))
60 SequenceSet other = (SequenceSet) obj;
65 if (__equalsCalc != null)
67 return (__equalsCalc == obj);
71 _equals = true && ((this.seqs == null && other.getSeqs() == null) || (this.seqs != null && java.util.Arrays
72 .equals(this.seqs, other.getSeqs())));
77 private boolean __hashCodeCalc = false;
79 public synchronized int hashCode()
85 __hashCodeCalc = true;
87 if (getSeqs() != null)
89 for (int i = 0; i < java.lang.reflect.Array.getLength(getSeqs()); i++)
91 java.lang.Object obj = java.lang.reflect.Array.get(getSeqs(), i);
92 if (obj != null && !obj.getClass().isArray())
94 _hashCode += obj.hashCode();
98 __hashCodeCalc = false;