2 VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases.
3 Copyright (C) 2008 Kevin Darty, Alain Denise and Yann Ponty.
4 electronic mail : Yann.Ponty@lri.fr
5 paper mail : LRI, bat 490 Université Paris-Sud 91405 Orsay Cedex France
7 This file is part of VARNA version 3.1.
8 VARNA version 3.1 is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
9 as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 VARNA version 3.1 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
12 without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
13 See the GNU General Public License for more details.
15 You should have received a copy of the GNU General Public License along with VARNA version 3.1.
16 If not, see http://www.gnu.org/licenses.
18 package fr.orsay.lri.varna.components;
20 import java.util.ArrayList;
22 import javax.swing.table.AbstractTableModel;
24 public class AnnotationTableModel extends AbstractTableModel {
28 private static final long serialVersionUID = 1L;
30 private String[] columnNames = { "Annotation" };
31 private ArrayList<ArrayList<Object>> data = new ArrayList<ArrayList<Object>>();
34 public AnnotationTableModel(ArrayList<Object> annot) {
35 ArrayList<Object> ligne;
36 for (int i = 0; i < annot.size(); i++) {
37 ligne = new ArrayList<Object>();
38 ligne.add(annot.get(i));
44 public int getColumnCount() {
45 return columnNames.length;
48 public int getRowCount() {
52 public String getColumnName(int col) {
53 return columnNames[col];
56 public Object getValueAt(int row, int col) {
57 return data.get(row).get(col);
61 * JTable uses this method to determine the default renderer/ editor for
62 * each cell. If we didn't implement this method, then the last column would
63 * contain text ("true"/"false"), rather than a check box.
65 @SuppressWarnings("unchecked")
66 public Class getColumnClass(int c) {
67 return getValueAt(0, c).getClass();
70 public boolean isCellEditable(int row, int col) {
71 // Note that the data/cell address is constant,
72 // no matter where the cell appears onscreen.
80 public void setValueAt(Object value, int row, int col) {
81 data.get(row).set(col, value);
82 fireTableCellUpdated(row, col);