2 VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases.
3 Copyright (C) 2008 Kevin Darty, Alain Denise and Yann Ponty.
4 electronic mail : Yann.Ponty@lri.fr
5 paper mail : LRI, bat 490 Université Paris-Sud 91405 Orsay Cedex France
7 This file is part of VARNA version 3.1.
8 VARNA version 3.1 is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
9 as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 VARNA version 3.1 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
12 without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
13 See the GNU General Public License for more details.
15 You should have received a copy of the GNU General Public License along with VARNA version 3.1.
16 If not, see http://www.gnu.org/licenses.
18 package fr.orsay.lri.varna.components;
20 import java.awt.Color;
21 import java.util.ArrayList;
23 import javax.swing.table.AbstractTableModel;
25 import fr.orsay.lri.varna.models.BaseList;
26 import fr.orsay.lri.varna.models.VARNAConfig;
27 import fr.orsay.lri.varna.models.rna.ModeleBase;
28 import fr.orsay.lri.varna.models.rna.ModelBaseStyle;
31 public class BaseTableModel extends AbstractTableModel {
35 private static final long serialVersionUID = 1L;
37 private String[] columnNames = { "Numbers", "Base", "Outline Color", "Inner Color",
38 "Name Color", "Number Color" };
39 private ArrayList<ArrayList<Object>> data = new ArrayList<ArrayList<Object>>();
40 private ArrayList<BaseList> _bases;
41 private boolean _singleBases = true;
43 public BaseTableModel(ArrayList<BaseList> bases) {
45 ArrayList<Object> ligne;
46 for (int i = 0; i < bases.size(); i++) {
47 ligne = new ArrayList<Object>();
48 BaseList bl = bases.get(i);
53 ligne.add(bl.getNumbers());
54 ligne.add(bl.getContents());
55 ligne.add(bl.getAverageOutlineColor());
56 ligne.add(bl.getAverageInnerColor());
57 ligne.add(bl.getAverageNameColor());
58 ligne.add(bl.getAverageNumberColor());
64 public int getColumnCount() {
65 return columnNames.length;
68 public int getRowCount() {
72 public String getColumnName(int col) {
73 return columnNames[col];
76 public Object getValueAt(int row, int col) {
77 return data.get(row).get(col);
81 * JTable uses this method to determine the default renderer/ editor for
82 * each cell. If we didn't implement this method, then the last column would
83 * contain text ("true"/"false"), rather than a check box.
85 @SuppressWarnings("unchecked")
86 public Class getColumnClass(int c) {
87 return getValueAt(0, c).getClass();
90 public boolean isCellEditable(int row, int col) {
91 // Note that the data/cell address is constant,
92 // no matter where the cell appears onscreen.
100 public void setValueAt(Object value, int row, int col) {
101 data.get(row).set(col, value);
102 if (col == 1 && _singleBases)
104 ModeleBase mb = _bases.get(row).getBases().get(0);
105 mb.setContent(value.toString());
107 fireTableCellUpdated(row, col);