test/jalview/analysis/AlignSeqTest.java

   1 package jalview.analysis;
   2
   3 import static org.junit.Assert.assertEquals;
   4 import static org.junit.Assert.assertNull;
   5
   6 import org.testng.annotations.Test;
   7
   8 public class AlignSeqTest
   9 {
  10   @Test(groups ={ "Functional" })
  11   public void testExtractGaps()
  12   {
  13     assertNull(AlignSeq.extractGaps(null, null));
  14     assertNull(AlignSeq.extractGaps(null, "ACG"));
  15     assertNull(AlignSeq.extractGaps("-. ", null));
  16
  17     assertEquals(" AC-G.T", AlignSeq.extractGaps("", " AC-G.T"));
  18     assertEquals("AC-G.T", AlignSeq.extractGaps(" ", " AC-G.T"));
  19     assertEquals("ACG.T", AlignSeq.extractGaps(" -", " AC-G.T"));
  20     assertEquals("ACGT", AlignSeq.extractGaps(" -.", " AC-G.T ."));
  21     assertEquals(" ACG.T", AlignSeq.extractGaps("-", " AC-G.T"));
  22   }
  23 }