2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.analysis;
23 import static org.testng.AssertJUnit.assertEquals;
24 import static org.testng.AssertJUnit.assertSame;
26 import jalview.datamodel.DBRefEntry;
28 import org.testng.annotations.Test;
30 public class CrossRefTest
32 @Test(groups = { "Functional" })
33 public void testFindXDbRefs()
35 DBRefEntry ref1 = new DBRefEntry("UNIPROT", "1", "A123");
36 DBRefEntry ref2 = new DBRefEntry("UNIPROTKB/TREMBL", "1", "A123");
37 DBRefEntry ref3 = new DBRefEntry("pdb", "1", "A123");
38 DBRefEntry ref4 = new DBRefEntry("EMBLCDSPROTEIN", "1", "A123");
39 DBRefEntry ref5 = new DBRefEntry("embl", "1", "A123");
40 DBRefEntry ref6 = new DBRefEntry("emblCDS", "1", "A123");
41 DBRefEntry ref7 = new DBRefEntry("GeneDB", "1", "A123");
42 DBRefEntry ref8 = new DBRefEntry("PFAM", "1", "A123");
43 DBRefEntry[] refs = new DBRefEntry[] { ref1, ref2, ref3, ref4, ref5,
49 DBRefEntry[] found = CrossRef.findXDbRefs(false, refs);
50 assertEquals(3, found.length);
51 assertSame(ref5, found[0]);
52 assertSame(ref6, found[1]);
53 assertSame(ref7, found[2]);
56 * Just the protein refs:
58 found = CrossRef.findXDbRefs(true, refs);
59 assertEquals(4, found.length);
60 assertSame(ref1, found[0]);
61 assertSame(ref2, found[1]);
62 assertSame(ref3, found[2]);
63 assertSame(ref4, found[3]);