test/jalview/bin/CommandsTest.java

   1 package jalview.bin;
   2
   3 import java.util.Date;
   4
   5 import org.testng.Assert;
   6 import org.testng.annotations.AfterClass;
   7 import org.testng.annotations.AfterMethod;
   8 import org.testng.annotations.BeforeClass;
   9 import org.testng.annotations.DataProvider;
  10 import org.testng.annotations.Test;
  11
  12 import jalview.gui.AlignFrame;
  13 import jalview.gui.Desktop;
  14 import jalview.gui.JvOptionPane;
  15
  16 @Test(singleThreaded = true)
  17 public class CommandsTest
  18 {
  19   @BeforeClass(alwaysRun = true)
  20   public static void setUpBeforeClass() throws Exception
  21   {
  22     Cache.loadProperties("test/jalview/gui/quitProps.jvprops");
  23     Date oneHourFromNow = new Date(
  24             System.currentTimeMillis() + 3600 * 1000);
  25     Cache.setDateProperty("JALVIEW_NEWS_RSS_LASTMODIFIED", oneHourFromNow);
  26   }
  27
  28   @AfterClass(alwaysRun = true)
  29   public static void resetProps()
  30   {
  31     Cache.loadProperties("test/jalview/testProps.jvprops");
  32   }
  33
  34   @BeforeClass(alwaysRun = true)
  35   public void setUpJvOptionPane()
  36   {
  37     JvOptionPane.setInteractiveMode(false);
  38     JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
  39   }
  40
  41   @AfterMethod(alwaysRun = true)
  42   public void tearDown()
  43   {
  44     if (Desktop.instance != null)
  45       Desktop.instance.closeAll_actionPerformed(null);
  46   }
  47
  48   @Test(groups = "Functional", dataProvider = "cmdLines")
  49   public void commandsOpenTest(String cmdLine, String sequence)
  50   {
  51     String[] args = cmdLine.split("\\s+");
  52     Jalview.main(args);
  53     Commands cmds = Jalview.getInstance().getCommands();
  54     Assert.assertNotNull(cmds);
  55     Assert.assertTrue(cmds.commandArgsProvided(),
  56             "Commands were not provided in the args");
  57     Assert.assertTrue(cmds.argsWereParsed(),
  58             "Overall command parse and operation is false");
  59
  60     if (sequence != null)
  61     {
  62       Assert.assertTrue(lookForSequenceName(sequence),
  63               "Sequence '" + sequence
  64                       + "' was not found in opened alignment files: "
  65                       + cmdLine);
  66     }
  67   }
  68
  69   public static boolean lookForSequenceName(String sequenceName)
  70   {
  71     AlignFrame[] afs = Desktop.getAlignFrames();
  72     for (AlignFrame af : afs)
  73     {
  74       for (String name : af.getViewport().getAlignment().getSequenceNames())
  75       {
  76         if (sequenceName.equals(name))
  77         {
  78           return true;
  79         }
  80       }
  81     }
  82     return false;
  83   }
  84
  85   @DataProvider(name = "cmdLines")
  86   public Object[][] cmdLines()
  87   {
  88     return new Object[][] {
  89         { "--open=examples/uniref50.fa", "FER1_SPIOL" },
  90         { "--argfile=test/jalview/bin/argparser/testfiles/argfile0.txt",
  91             null } };
  92   }
  93
  94   @DataProvider(name = "openingAlignments")
  95   public Object[][] openingAlignments()
  96   {
  97     return new Object[][] {
  98         { "--open=examples/uniref50.fa", 1 },
  99         { "--argfile=test/jalview/bin/argparser/testfiles/argfile0.txt", } };
 100   }
 101
 102 }