1 #---JalviewX Properties File---
2 #Fri Apr 25 09:54:25 BST 2014
5 SHOW_WSDISCOVERY_ERRORS=true
7 JALVIEW_RSS_WINDOW_SCREEN_WIDTH=550
8 JAVA_CONSOLE_SCREEN_WIDTH=450
9 LAST_DIRECTORY=/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples
11 SORT_ALIGNMENT=No sort
13 SEQUENCE_LINKS=EMBL-EBI Search|http\://www.ebi.ac.uk/ebisearch/search.ebi?db\=allebi&query\=$SEQUENCE_ID$
15 RECENT_URL=http\://www.jalview.org/examples/exampleFile_2_7.jar
20 SHOW_DBREFS_TOOLTIP=true
22 SCREENGEOMETRY_HEIGHT=1600
23 JAVA_CONSOLE_SCREEN_Y=475
24 JAVA_CONSOLE_SCREEN_X=830
27 STARTUP_FILE=http\://www.jalview.org/examples/exampleFile_2_3.jar
28 JAVA_CONSOLE_SCREEN_HEIGHT=162
32 SHOW_GROUP_CONSERVATION=false
33 SHOW_JWS2_SERVICES=true
34 SHOW_NPFEATS_TOOLTIP=true
38 RSBS_SERVICES=|Multi-Harmony|Analysis|Sequence Harmony and Multi-Relief (Brandt et al. 2010)|hseparable,gapCharacter\='-',returns\='ANNOTATION'|?tool\=jalview|http\://zeus.few.vu.nl/programs/shmrwww/index.php?tool\=jalview&groups\=$PARTITION\:min\='2',minsize\='2',sep\=' '$&ali_file\=$ALIGNMENT\:format\='FASTA',writeasfile$
39 AUTHORFNAMES=Jim Procter, Andrew Waterhouse, Jan Engelhardt, Lauren Lui, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton
40 JALVIEW_RSS_WINDOW_SCREEN_HEIGHT=328
41 SHOW_GROUP_CONSENSUS=false
42 SHOW_CONSENSUS_HISTOGRAM=true
44 AUTHORS=J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
45 FIGURE_AUTOIDWIDTH=false
47 ANNOTATIONCOLOUR_MIN=ffc800
48 SHOW_STARTUP_FILE=false
49 RECENT_FILE=examples/uniref50.fa\t/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples/RF00031_folded.stk\t/Volumes/Data/Users/jimp/bs_ig_mult.out
50 DEFAULT_FILE_FORMAT=FASTA
51 SHOW_JAVA_CONSOLE=false
57 JALVIEW_NEWS_RSS_LASTMODIFIED=Apr 23, 2014 2\:53\:26 PM
58 BUILD_DATE=01 November 2013
60 SHOW_CONSENSUS_LOGO=false
61 SCREENGEOMETRY_WIDTH=2560
62 JALVIEW_RSS_WINDOW_SCREEN_Y=0
64 JALVIEW_RSS_WINDOW_SCREEN_X=0
65 SHOW_UNCONSERVED=false
69 ANNOTATIONCOLOUR_MAX=ff0000
70 AUTO_CALC_CONSENSUS=true
72 DAS_ACTIVE_SOURCE=uniprot\t
73 JWS2HOSTURLS=http\://www.compbio.dundee.ac.uk/jabaws
76 SHOW_ENFIN_SERVICES=true
81 #DAS_REGISTRY_URL=http\://www.dasregistry.org/das/ # retired 01/05/2015
82 DAS_REGISTRY_URL=http\://www.ebi.ac.uk/das-srv/registry/das/
87 SHOW_CONSERVATION=true