1 #---JalviewX Properties File---
2 #Tue May 28 14:24:20 BST 2024
7 MEMORY_CUSTOMISED_SETTINGS=false
8 EPS_RENDERING=Prompt each time
10 SHOW_ENFIN_SERVICES=true
11 JAVA_CONSOLE_SCREEN_WIDTH=900
16 SHOW_STARTUP_FILE=true
17 SCREENGEOMETRY_HEIGHT=2160
18 JALVIEW_NEWS_RSS_LASTMODIFIED=22 May 2024, 16\:43\:10
27 RSBS_SERVICES=|Multi-Harmony|Analysis|Sequence Harmony and Multi-Relief (Brandt et al. 2010)|hseparable,gapCharacter\='-',returns\='ANNOTATION'|?tool\=jalview|http\://zeus.few.vu.nl/programs/shmrwww/index.php?tool\=jalview&groups\=$PARTITION\:min\='2',minsize\='2',sep\=' '$&ali_file\=$ALIGNMENT\:format\='Fasta',writeasfile$
31 SHOW_JAVA_CONSOLE=false
32 SCALE_PROTEIN_TO_CDNA=false
33 BACKUPFILES_SAVED=.bak%n\t3\tfalse\tfalse\t3\tfalse
34 AUTO_CALC_CONSENSUS=true
37 SHOW_GROUP_CONSENSUS=false
39 LAST_DIRECTORY=/home/bsoares/Work/git/develop/jalview/examples
40 JAVA_CONSOLE_SCREEN_Y=368
41 JAVA_CONSOLE_SCREEN_X=1010
42 DEFAULT_COLOUR_PROT=None
43 SORT_ALIGNMENT=No sort
45 SHOW_AUTOCALC_ABOVE=true
48 DEFAULT_URL=EMBL-EBI Search
49 HTML_RENDERING=Prompt each time
50 AUTHORS=J Procter, M Carstairs, B Soares, K Mourao, TC Ofoegbu, AM Waterhouse, J Engelhardt, LM Lui, A Menard, D Barton, N Sherstnev, D Roldan-Martinez, M Clamp, S Searle, G Barton
51 SHOW_OV_HIDDEN_AT_START=false
53 SHOW_DBREFS_TOOLTIP=true
55 STARTUP_FILE=/home/bsoares/Work/git/develop/jalview/examples/uniref50.fa
57 DEFAULT_FILE_FORMAT=Fasta
61 JAVA_CONSOLE_SCREEN_HEIGHT=1328
62 DEFAULT_COLOUR_NUC=None
65 JAVA_COMPILE_VERSION=8
68 AUTHORFNAMES=Jim Procter, Mungo Carstairs, Ben Soares, Kira Mourao, Tochukwu 'Charles' Ofoegbu, Andrew Waterhouse, Jan Engelhardt, Lauren Lui, Anne Menard, Daniel Barton, Natasha Sherstnev, David Roldan-Martinez, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton
71 SHOW_CONSENSUS_LOGO=false
72 RECENT_FILE=examples/uniref50.fa\t/home/bsoares/Work/git/develop/jalview/examples/uniref50.fa\t/home/bsoares/Downloads/mview-I20240419-154802-0673-19607440-p1m-aln-html.txt\t/home/bsoares/Work/Journal_Club/2024-04-24/examples/jalview_biojs_msaviewer.html\t/home/bsoares/Work/Journal_Club/2024-04-24/examples/jalview_embedded_svg.html\t./estrogenReceptorCdna.fa\t/home/bsoares/Work/git/develop/jalview/examples/exampleFile_2_7.jar\t/home/bsoares/Work/git/develop/jalview/test.jvp\t/home/bsoares/Work/git/develop/jalview/test.fa\t./test/files/annotation_label_width/sample.a2m\t/home/bsoares/Work/git/develop/jalview/test/files/annotation_label_width/sample.a2m
74 SHOW_WSDISCOVERY_ERRORS=true
75 LATEST_VERSION=2.11.3.3
76 ANNOTATIONCOLOUR_MIN=ffc800
78 SCREENGEOMETRY_WIDTH=3840
79 SHOW_NPFEATS_TOOLTIP=true
81 SVG_RENDERING=Prompt each time
84 BACKUPFILES_ENABLED=true
85 RECENT_URL=http\://jalview.org/examples/uniref50.fa\thttps\://jalview.org/examples/plantfdx.fa\thttps\://www.jalview.org/tutorial/schools/Spike-7BNM-Jmol.jvp\thttp\://www.jalview.org/tutorial/schools/Spike-7BNM-Jmol.jvp\thttps\://jalview.org/examples/uniref50.fa\thttps\://www.jalview.org/examples/exampleFile_2_7.jvp
86 EXPORT_EMBBED_BIOJSON=true
89 JALVIEW_RSS_WINDOW_SCREEN_X=0
90 JALVIEW_RSS_WINDOW_SCREEN_Y=0
92 ANNOTATIONCOLOUR_MAX=ff0000
94 JALVIEW_RSS_WINDOW_SCREEN_HEIGHT=577
95 JWS2HOSTURLS=http\://www.compbio.dundee.ac.uk/jabaws
96 SHOW_JWS2_SERVICES=true
98 BACKUPFILES_FC_INCLUDE=false
102 SHOW_GROUP_CONSERVATION=false
103 FIGURE_AUTOIDWIDTH=false
104 STRUCTURE_DISPLAY=JMOL
106 SEQUENCE_LINKS=EMBL-EBI Search|https\://www.ebi.ac.uk/ebisearch/search.ebi?db\=allebi&query\=$SEQUENCE_ID$
107 JALVIEW_RSS_WINDOW_SCREEN_WIDTH=534
108 SHOW_CONSENSUS_HISTOGRAM=true