2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.datamodel;
23 import static org.testng.Assert.assertEquals;
25 import org.testng.annotations.Test;
27 public class AlignmentViewTest
29 @Test(groups = { "Functional" })
30 public void testGetVisibleAlignmentGapChar()
32 SeqCigar ss = new SeqCigar(new Sequence("One", "A..CDE"));
33 CigarArray ca = new CigarArray(new CigarSimple[] { ss });
34 AlignmentView av = new AlignmentView(ca);
35 String dots = av.getSequenceStrings('.')[0];
36 assertEquals(dots, "A..CDE");
37 String dollars = av.getSequenceStrings('$')[0];
38 assertEquals(dollars, "A$$CDE");
39 assertEquals(av.getVisibleAlignment('$').getSequenceAt(0)
40 .getSequenceAsString(), "A$$CDE");