test/jalview/datamodel/AlignmentViewTest.java

   1 package jalview.datamodel;
   2
   3 import static org.testng.Assert.assertEquals;
   4
   5 import org.testng.annotations.Test;
   6
   7 public class AlignmentViewTest
   8 {
   9   @Test(groups = { "Functional" })
  10   public void testGetVisibleAlignmentGapChar()
  11   {
  12     SeqCigar ss = new SeqCigar(new Sequence("One", "A..CDE"));
  13     CigarArray ca = new CigarArray(new CigarSimple[] { ss });
  14     AlignmentView av = new AlignmentView(ca);
  15     String dots = av.getSequenceStrings('.')[0];
  16     assertEquals(dots, "A..CDE");
  17     String dollars = av.getSequenceStrings('$')[0];
  18     assertEquals(dollars, "A$$CDE");
  19     assertEquals(av.getVisibleAlignment('$').getSequenceAt(0)
  20             .getSequenceAsString(), "A$$CDE");
  21   }
  22 }