1 package jalview.datamodel;
2 import static org.testng.Assert.assertEquals;
4 import org.testng.annotations.Test;
6 public class AlignmentViewTest
8 @Test(groups = { "Functional" })
9 public void testGetVisibleAlignmentGapChar()
11 SeqCigar ss = new SeqCigar(new Sequence("One", "A..CDE"));
12 CigarArray ca = new CigarArray(new CigarSimple[] { ss });
13 AlignmentView av = new AlignmentView(ca);
14 String dots = av.getSequenceStrings('.')[0];
15 assertEquals(dots, "A..CDE");
16 String dollars = av.getSequenceStrings('$')[0];
17 assertEquals(dollars, "A$$CDE");
18 assertEquals(av.getVisibleAlignment('$').getSequenceAt(0)
19 .getSequenceAsString(), "A$$CDE");