1 package jalview.datamodel;
3 import static org.testng.AssertJUnit.assertFalse;
4 import static org.testng.AssertJUnit.assertTrue;
6 import jalview.util.MapList;
8 import org.testng.annotations.Test;
10 public class DBRefEntryTest
14 * Tests for the method that compares equality of reference (but not mapping)
16 @Test(groups = { "Functional" })
17 public void testEqualRef()
19 DBRefEntry ref1 = new DBRefEntry("UNIPROT", "1", "V71633");
20 assertTrue(ref1.equalRef(ref1));
21 assertFalse(ref1.equalRef(null));
23 // comparison is not case sensitive
24 DBRefEntry ref2 = new DBRefEntry("uniprot", "1", "v71633");
25 assertTrue(ref1.equalRef(ref2));
26 assertTrue(ref2.equalRef(ref1));
28 // source, version and accessionid must match
29 assertFalse(ref1.equalRef(new DBRefEntry("UNIPRO", "1", "V71633")));
30 assertFalse(ref1.equalRef(new DBRefEntry("UNIPROT", "2", "V71633")));
31 assertFalse(ref1.equalRef(new DBRefEntry("UNIPROT", "1", "V71632")));
33 // presence of or differences in mappings are ignored
34 ref1.setMap(new Mapping(new MapList(new int[] { 1, 3 }, new int[] { 1,
36 assertTrue(ref1.equalRef(ref2));
37 assertTrue(ref2.equalRef(ref1));
38 ref1.setMap(new Mapping(new MapList(new int[] { 1, 6 }, new int[] { 1,
40 assertTrue(ref1.equalRef(ref2));
41 assertTrue(ref2.equalRef(ref1));