test/jalview/datamodel/SequenceDummyTest.java

   1 package jalview.datamodel;
   2
   3 import org.testng.Assert;
   4 import org.testng.annotations.Test;
   5
   6
   7 @Test
   8 public class SequenceDummyTest
   9 {
  10   /**
  11    * test for become method
  12    */
  13   public void testBecome()
  14   {
  15     SequenceI seq = new Sequence("OrigSeq", "ASEQUENCE");
  16     SequenceFeature ofeat = new SequenceFeature("NewFeat", "somedesc", 3,
  17             12, 2.3f, "none");
  18
  19     SequenceDummy dummySeq = new SequenceDummy("OrigSeq");
  20     dummySeq.addSequenceFeature(ofeat);
  21     dummySeq.become(seq);
  22     Assert.assertFalse(dummySeq.isDummy(),
  23             "Dummy sequence did not become a full sequence");
  24     Assert.assertTrue(
  25             seq.getSequenceAsString()
  26                     .equals(dummySeq.getSequenceAsString()),
  27             "Sequence was not updated from template");
  28     boolean found = false;
  29     for (SequenceFeature sf : dummySeq.getSequenceFeatures())
  30     {
  31       if (sf == ofeat)
  32       {
  33         found = true;
  34         break;
  35       }
  36     }
  37     Assert.assertTrue(found, "Didn't retain original sequence feature");
  38
  39     // todo - should test all aspect of copy constructor
  40   }
  41 }