test/jalview/datamodel/SequenceDummyTest.java

   1 package jalview.datamodel;
   2
   3 import static org.testng.AssertJUnit.assertFalse;
   4 import static org.testng.AssertJUnit.assertTrue;
   5
   6 import org.testng.annotations.Test;
   7
   8 public class SequenceDummyTest
   9 {
  10   /**
  11    * test for become method
  12    */
  13   @Test(groups = { "Functional" })
  14   public void testBecome()
  15   {
  16     SequenceI seq = new Sequence("OrigSeq", "ASEQUENCE");
  17     SequenceFeature ofeat = new SequenceFeature("NewFeat", "somedesc", 3,
  18             12, 2.3f, "none");
  19
  20     SequenceDummy dummySeq = new SequenceDummy("OrigSeq");
  21     dummySeq.addSequenceFeature(ofeat);
  22     dummySeq.become(seq);
  23     assertFalse("Dummy sequence did not become a full sequence",
  24             dummySeq.isDummy());
  25     assertTrue("Sequence was not updated from template", seq
  26             .getSequenceAsString().equals(dummySeq.getSequenceAsString()));
  27     boolean found = false;
  28     for (SequenceFeature sf : dummySeq.getSequenceFeatures())
  29     {
  30       if (sf == ofeat)
  31       {
  32         found = true;
  33         break;
  34       }
  35     }
  36     assertTrue("Didn't retain original sequence feature", found);
  37
  38     // todo - should test all aspect of copy constructor
  39   }
  40 }