test/jalview/datamodel/SequenceDummyTest.java

   1 package jalview.datamodel;
   2
   3
   4 import org.junit.Assert;
   5 import org.junit.Test;
   6
   7 public class SequenceDummyTest
   8 {
   9   /**
  10    * test for become method
  11    */
  12   @Test
  13   public void testBecome()
  14   {
  15     SequenceI seq = new Sequence("OrigSeq", "ASEQUENCE");
  16     SequenceFeature ofeat = new SequenceFeature("NewFeat", "somedesc", 3,
  17             12, 2.3f, "none");
  18
  19     SequenceDummy dummySeq = new SequenceDummy("OrigSeq");
  20     dummySeq.addSequenceFeature(ofeat);
  21     dummySeq.become(seq);
  22     Assert.assertFalse("Dummy sequence did not become a full sequence",
  23             dummySeq.isDummy());
  24     Assert.assertTrue("Sequence was not updated from template", seq
  25             .getSequenceAsString().equals(dummySeq.getSequenceAsString()));
  26     boolean found = false;
  27     for (SequenceFeature sf : dummySeq.getSequenceFeatures())
  28     {
  29       if (sf == ofeat)
  30       {
  31         found = true;
  32         break;
  33       }
  34     }
  35     Assert.assertTrue("Didn't retain original sequence feature", found);
  36
  37     // todo - should test all aspect of copy constructor
  38   }
  39 }