test/jalview/datamodel/SequenceDummyTest.java

   1 package jalview.datamodel;
   2
   3 import static org.testng.AssertJUnit.assertFalse;
   4 import static org.testng.AssertJUnit.assertTrue;
   5
   6 import org.testng.annotations.Test;
   7
   8
   9 public class SequenceDummyTest
  10 {
  11   /**
  12    * test for become method
  13    */
  14   @Test(groups ={ "Functional" })
  15   public void testBecome()
  16   {
  17     SequenceI seq = new Sequence("OrigSeq", "ASEQUENCE");
  18     SequenceFeature ofeat = new SequenceFeature("NewFeat", "somedesc", 3,
  19             12, 2.3f, "none");
  20
  21     SequenceDummy dummySeq = new SequenceDummy("OrigSeq");
  22     dummySeq.addSequenceFeature(ofeat);
  23     dummySeq.become(seq);
  24     assertFalse("Dummy sequence did not become a full sequence",
  25             dummySeq.isDummy());
  26     assertTrue("Sequence was not updated from template", seq
  27             .getSequenceAsString().equals(dummySeq.getSequenceAsString()));
  28     boolean found = false;
  29     for (SequenceFeature sf : dummySeq.getSequenceFeatures())
  30     {
  31       if (sf == ofeat)
  32       {
  33         found = true;
  34         break;
  35       }
  36     }
  37     assertTrue("Didn't retain original sequence feature", found);
  38
  39     // todo - should test all aspect of copy constructor
  40   }
  41 }