4 package jalview.ext.htsjdk;
6 import jalview.datamodel.SequenceI;
10 import org.testng.Assert;
11 import org.testng.annotations.Test;
17 public class TestHtsContigDb
20 public final void testHTSReferenceSequence() throws Exception
22 HtsContigDb remmadb = new HtsContigDb("REEMADB", new File(
23 "test/jalview/ext/htsjdk/pgmb.fasta"));
25 Assert.assertTrue(remmadb.isValid());
27 SequenceI sq = remmadb.getSequenceProxy("Deminut");
28 Assert.assertNotNull(sq);
29 Assert.assertNotEquals(0, sq.getLength());