test/jalview/ext/rbvi/chimera/testProps.jvprops

   1 ANNOTATIONCOLOUR_MAX=ff0000
   2 ANNOTATIONCOLOUR_MIN=ffc800
   3 ANTI_ALIAS=false
   4 AUTHORFNAMES=Jim Procter, Andrew Waterhouse, Jan Engelhardt, Lauren Lui, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton
   5 AUTHORS=J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
   6 AUTO_CALC_CONSENSUS=true
   7 BLC_JVSUFFIX=true
   8 BUILD_DATE=01 November 2013
   9 CLUSTAL_JVSUFFIX=true
  10 DAS_ACTIVE_SOURCE=uniprot\t
  11 DAS_LOCAL_SOURCE=
  12 DAS_REGISTRY_URL=http\://www.ebi.ac.uk/das-srv/registry/das/
  13 DEFAULT_COLOUR=None
  14 DEFAULT_FILE_FORMAT=FASTA
  15 FASTA_JVSUFFIX=true
  16 FIGURE_AUTOIDWIDTH=false
  17 FIGURE_USERIDWIDTH=
  18 FONT_NAME=SansSerif
  19 FONT_SIZE=10
  20 FONT_STYLE=plain
  21 GAP_SYMBOL=-
  22 ID_ITALICS=true
  23 JALVIEW_NEWS_RSS_LASTMODIFIED=Apr 23, 2014 2\:53\:26 PM
  24 JALVIEW_RSS_WINDOW_SCREEN_HEIGHT=328
  25 JALVIEW_RSS_WINDOW_SCREEN_WIDTH=550
  26 JALVIEW_RSS_WINDOW_SCREEN_X=0
  27 JALVIEW_RSS_WINDOW_SCREEN_Y=0
  28 JAVA_CONSOLE_SCREEN_HEIGHT=162
  29 JAVA_CONSOLE_SCREEN_WIDTH=450
  30 JAVA_CONSOLE_SCREEN_X=830
  31 JAVA_CONSOLE_SCREEN_Y=475
  32 JWS2HOSTURLS=http\://www.compbio.dundee.ac.uk/jabaws
  33 LAST_DIRECTORY=/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples
  34 LATEST_VERSION=2.8.0b1
  35 MSF_JVSUFFIX=true
  36 NOQUESTIONNAIRES=true
  37 PAD_GAPS=false
  38 PFAM_JVSUFFIX=true
  39 PILEUP_JVSUFFIX=true
  40 PIR_JVSUFFIX=true
  41 PIR_MODELLER=false
  42 RECENT_FILE=examples/uniref50.fa\t/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples/RF00031_folded.stk\t/Volumes/Data/Users/jimp/bs_ig_mult.out
  43 RECENT_URL=http\://www.jalview.org/examples/exampleFile_2_7.jar
  44 RIGHT_ALIGN_IDS=false
  45 RSBS_SERVICES=|Multi-Harmony|Analysis|Sequence Harmony and Multi-Relief (Brandt et al. 2010)|hseparable,gapCharacter\='-',returns\='ANNOTATION'|?tool\=jalview|http\://zeus.few.vu.nl/programs/shmrwww/index.php?tool\=jalview&groups\=$PARTITION\:min\='2',minsize\='2',sep\=' '$&ali_file\=$ALIGNMENT\:format\='FASTA',writeasfile$
  46 SCREEN_HEIGHT=650
  47 SCREEN_WIDTH=900
  48 SCREEN_X=936
  49 SCREEN_Y=768
  50 SCREENGEOMETRY_HEIGHT=1600
  51 SCREENGEOMETRY_WIDTH=2560
  52 SEQUENCE_LINKS=EMBL-EBI Search|http\://www.ebi.ac.uk/ebisearch/search.ebi?db\=allebi&query\=$SEQUENCE_ID$
  53 SHOW_ANNOTATIONS=true
  54 SHOW_CONSENSUS_HISTOGRAM=true
  55 SHOW_CONSENSUS_LOGO=false
  56 SHOW_CONSERVATION=true
  57 SHOW_DBREFS_TOOLTIP=true
  58 SHOW_ENFIN_SERVICES=true
  59 SHOW_FULLSCREEN=false
  60 SHOW_GROUP_CONSENSUS=false
  61 SHOW_GROUP_CONSERVATION=false
  62 SHOW_IDENTITY=true
  63 SHOW_JAVA_CONSOLE=false
  64 SHOW_JVSUFFIX=true
  65 SHOW_JWS2_SERVICES=true
  66 SHOW_NPFEATS_TOOLTIP=true
  67 SHOW_OVERVIEW=false
  68 SHOW_QUALITY=true
  69 SHOW_STARTUP_FILE=false
  70 SHOW_UNCONSERVED=false
  71 SHOW_WSDISCOVERY_ERRORS=true
  72 SORT_ALIGNMENT=No sort
  73 SORT_BY_TREE=false
  74 STARTUP_FILE=
  75 USAGESTATS=false
  76 USE_PROXY=false
  77 VERSION_CHECK=false
  78 VERSION=2.8b1
  79 WRAP_ALIGNMENT=false
  80 WSMENU_BYHOST=false
  81 WSMENU_BYTYPE=false
  82 YEAR=2011