2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 import static org.testng.AssertJUnit.assertEquals;
25 import jalview.datamodel.Alignment;
26 import jalview.datamodel.AlignmentI;
27 import jalview.datamodel.Sequence;
28 import jalview.datamodel.SequenceI;
29 import jalview.schemes.ZappoColourScheme;
31 import java.awt.Color;
33 import org.testng.annotations.Test;
35 public class SequenceRendererTest
38 @Test(groups = { "Functional" })
39 public void testGetResidueBoxColour_zappo()
41 SequenceI seq = new Sequence("name", "MATVLGSPRAPAFF"); // FER1_MAIZE...
42 AlignmentI al = new Alignment(new SequenceI[] { seq });
43 final AlignViewport av = new AlignViewport(al);
44 SequenceRenderer sr = new SequenceRenderer(av);
45 av.setGlobalColourScheme(new ZappoColourScheme());
47 // @see ResidueProperties.zappo
48 assertEquals(Color.pink, sr.getResidueColour(seq, 0, null)); // M
49 assertEquals(Color.green, sr.getResidueColour(seq, 2, null)); // T
50 assertEquals(Color.magenta, sr.getResidueColour(seq, 5, null)); // G
51 assertEquals(Color.orange, sr.getResidueColour(seq, 12, null)); // F
53 // TODO more tests for getResidueBoxColour covering groups, feature rendering,