2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 import static org.testng.Assert.assertFalse;
24 import static org.testng.Assert.assertTrue;
25 import static org.testng.AssertJUnit.assertNotNull;
27 import org.testng.annotations.BeforeClass;
28 import org.testng.annotations.Test;
30 import jalview.datamodel.AlignmentAnnotation;
31 import jalview.gui.AlignFrame;
32 import jalview.gui.AnnotationExporter;
33 import jalview.gui.JvOptionPane;
35 public class AnnotationExporterTest
38 @BeforeClass(alwaysRun = true)
39 public void setUpJvOptionPane()
41 JvOptionPane.setInteractiveMode(false);
42 JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
45 @Test(groups = "Functional")
46 public void testAnnotationExportAsCSV()
49 * JAL-4342 test that export all alignment annotation as CSV or as an annotations file DOES NOT produce empty text box/file
51 AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
52 ">Seq1\nQRSIL\n>Seq2\nFTHND\n>Seq3\nRPVSL\n",
53 DataSourceType.PASTE);
54 AlignmentAnnotation[] annots = af.alignPanel.getAlignment()
55 .getAlignmentAnnotation();
57 assertTrue(annots.length > 1);
59 AnnotationExporter ae = new AnnotationExporter(af.alignPanel);
60 ae.exportAnnotations();
64 exported = ae.getAnnotationsText();
65 assertNotNull(exported);
66 assertTrue(exported.contains(annots[0].label));
67 assertTrue(exported.contains(annots[1].label));
69 // just one annotation row
70 ae.exportAnnotation(annots[1]);
71 exported = ae.getAnnotationsText();
72 assertNotNull(exported);
73 assertFalse(exported.contains(annots[0].label));
74 assertTrue(exported.contains(annots[1].label));